RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 KLRG1Q96E93 195 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 BTBD6Q96KE9 485 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 HEMGNQ9BXL5 484 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 TMEM117Q9H0C3 514 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 DPEP3Q9H4B8 488 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 ADPRHL2Q9NX46 363 aa10.36□□□□□ -0.75
VPS39-214ENST00000614932 RBBP6Q7Z6E9 1792 aaKnown RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 HNRNPDLO14979 420 aaKnown RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 CLDN3O15551 220 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 USP12O75317 370 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 CLCNKBP51801 687 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 DMP1Q13316 513 aaPredicted RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 C6orf132Q5T0Z8 1188 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 TRAF7Q6Q0C0 670 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 UTS2BQ765I0 119 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 C4orf19Q8IY42 314 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 ZCCHC7Q8N3Z6 543 aaKnown RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 SNX31Q8N9S9 440 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 LMO3Q8TAP4 145 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 NSUN6Q8TEA1 469 aaKnown RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 RAB2BQ8WUD1 216 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 SH3KBP1Q96B97 665 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 SLC10A4Q96EP9 437 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 SERPINI1Q99574 410 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 FAM213AQ9BRX8 229 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 MCMBPQ9BTE3 642 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 RHOBTB2Q9BYZ6 727 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 TRIM15Q9C019 465 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 POLE4Q9NR33 117 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 KCND2Q9NZV8 630 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 IP6K2Q9UHH9 426 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 DNMT3LQ9UJW3 386 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 CPSF3Q9UKF6 684 aaKnown RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 TBX20Q9UMR3 447 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 DOCK5Q9H7D0 1870 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 NTRK1P04629 796 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 SNRPAP09012 282 aaKnown RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 MAPK10P53779 464 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 ACTR2P61160 394 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 BST1Q10588 318 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 FSCBQ5H9T9 825 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 ATG14Q6ZNE5 492 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 GADL1Q6ZQY3 521 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 SLC47A2Q86VL8 602 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 GALNT12Q8IXK2 581 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 PIAS4Q8N2W9 510 aaPredicted RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 TMEM161BQ8NDZ6 487 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 REPS2Q8NFH8 660 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 MZB1Q8WU39 189 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 ATG4AQ8WYN0 398 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 HDAC2Q92769 488 aaKnown RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 CD101Q93033 1021 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 HEXIM2Q96MH2 286 aaKnown RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 IL12RB2Q99665 862 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 EBF4Q9BQW3 602 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 JPH1Q9HDC5 661 aaPredicted RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 DDX28Q9NUL7 540 aaKnown RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 MARCOQ9UEW3 520 aaPredicted RBP10.35□□□□□ -0.75
VPS39-214ENST00000614932 FETUBQ9UGM5 382 aa10.35□□□□□ -0.75
VPS39-214ENST00000614932 MEN1O00255 615 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 DAB1O75553 588 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 OR7A10O76100 309 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 OR5F1O95221 314 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 PGK2P07205 417 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 ACOT2P49753 483 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 ZNF33BQ06732 778 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 GALNT3Q14435 633 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 MESDQ14696 234 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 TAF12Q16514 161 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 KCNT1Q5JUK3 1230 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 SDE2Q6IQ49 451 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 SLC39A4Q6P5W5 647 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 ADGRD1Q6QNK2 874 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 LINC00299Q6ZSB3 139 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 KCTD8Q6ZWB6 473 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 LINC00518Q8N0U6 118 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 PARP8Q8N3A8 854 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 TAS1R2Q8TE23 839 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 HTRA1Q92743 480 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 ZFYVE19Q96K21 471 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 ZBTB45Q96K62 511 aaPredicted RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 MTG1Q9BT17 334 aaPredicted RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 RPRD1BQ9NQG5 326 aaKnown RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 TOR4AQ9NXH8 423 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 MRPL39Q9NYK5 338 aaKnown RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 HCN4Q9Y3Q4 1203 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 MAGEB16A2A368 324 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 GTPBP10A4D1E9 387 aaKnown RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 CENPXA8MT69 81 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 HTRA2O43464 458 aaPredicted RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 MT-ND3P03897 115 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 GSNP06396 782 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 MATN1P21941 496 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 ARNTP27540 789 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 JAK3P52333 1124 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 GTF2BQ00403 316 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 VGLL4Q14135 290 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 CATSPERGQ6ZRH7 1159 aa10.34□□□□□ -0.75
VPS39-214ENST00000614932 CDR2LQ86X02 465 aaPredicted RBP10.34□□□□□ -0.75
VPS39-214ENST00000614932 SNX32Q86XE0 403 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms