RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PTPN7P35236 360 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 RPL6Q02878 288 aaKnown RBP16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 SFSWAPQ12872 951 aaKnown RBP16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 ELF2Q15723 593 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 TIGD7Q6NT04 549 aaPredicted RBP16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 AADACL2Q6P093 401 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 BBS12Q6ZW61 710 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 HDDC3Q8N4P3 179 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 GANCQ8TET4 914 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 LRRN4Q8WUT4 740 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 NSMCE1Q8WV22 266 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 FATE1Q969F0 183 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 FAM131CQ96AQ9 280 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 LRIG1Q96JA1 1093 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 OLFM3Q96PB7 478 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 LGMNQ99538 433 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 HERPUD2Q9BSE4 406 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 NEUROG2Q9H2A3 272 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 SAE1Q9UBE0 346 aaPredicted RBP16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 EVLQ9UI08 416 aaPredicted RBP16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 RAB23Q9ULC3 237 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 FZD4Q9ULV1 537 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 NCKAP1Q9Y2A7 1128 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 THADAQ6YHU6 1953 aa16.79■□□□□ 0.28
CCDC28A-202ENST00000611852 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 PLK4O00444 970 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 MATN3O15232 486 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 ZSCAN12O43309 604 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 NDUFS2O75306 463 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 PECAM1P16284 738 aaPredicted RBP16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 NR2C2P49116 596 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 PPIDQ08752 370 aaKnown RBP16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 NSUN2Q08J23 767 aaKnown RBP eCLIP16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 HNRNPDQ14103 355 aaKnown RBP16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 ZNF235Q14590 738 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 SPDYCQ5MJ68 293 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 MEI1Q5TIA1 1274 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 MARC1Q5VT66 337 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 LAIR1Q6GTX8 287 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 LPCAT2Q7L5N7 544 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 REXO1L1PQ8IX06 675 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 TMEFF1Q8IYR6 380 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 CCNYQ8ND76 341 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 TRIM58Q8NG06 486 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 MAML1Q92585 1016 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 ARRDC3Q96B67 414 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 ZNF419Q96HQ0 510 aaPredicted RBP16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 GPR174Q9BXC1 333 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 OSBPL8Q9BZF1 889 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 BTBD1Q9H0C5 482 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 SGK2Q9HBY8 427 aa16.78■□□□□ 0.28
CCDC28A-202ENST00000611852 INSIG1O15503 277 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 RHOBTB1O94844 696 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 CETN2P41208 172 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 MMP13P45452 471 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 CSNK1DP48730 415 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 RENBPP51606 427 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 RAD51Q06609 339 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 ZNF33AQ06730 810 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 CNTN1Q12860 1018 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 ZNF211Q13398 564 aaPredicted RBP16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 PDK1Q15118 436 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 DCAF12L1Q5VU92 463 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 CCDC13Q8IYE1 715 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 PGBD5Q8N414 524 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 DEFB119Q8N690 84 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 TEX26Q8N6G2 289 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 P3H4Q92791 437 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 PPP1R16AQ96I34 528 aa16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 CPEB1Q9BZB8 566 aaKnown RBP16.77■□□□□ 0.28
CCDC28A-202ENST00000611852 OTOGLQ3ZCN5 2332 aa16.77■□□□□ 0.27
CCDC28A-202ENST00000611852 ZFHX2Q9C0A1 2572 aaPredicted RBP16.77■□□□□ 0.27
CCDC28A-202ENST00000611852 PRR23AA6NEV1 266 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 PPP1R12AO14974 1030 aaPredicted RBP16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 SEMA4FO95754 770 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 UGT2B4P06133 528 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 CCNB1P14635 433 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 ITGB7P26010 798 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 HSPA9P38646 679 aaKnown RBP16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 PTGER3P43115 390 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 AGBL4Q5VU57 503 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 BZW1Q7L1Q6 419 aaKnown RBP16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 ASCL5Q7RTU5 278 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 SRLQ86TD4 932 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 SLC41A1Q8IVJ1 513 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 BBS5Q8N3I7 341 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 LOXL4Q96JB6 756 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 MGME1Q9BQP7 344 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 OSBPL1AQ9BXW6 950 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 HDAC8Q9BY41 377 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 BRD8Q9H0E9 1235 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 CEP192Q8TEP8 1941 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 GON4LQ3T8J9 2241 aa16.76■□□□□ 0.27
CCDC28A-202ENST00000611852 APOC4-APOC2K7ER74 178 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 SLC7A4O43246 635 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 GJB3O75712 270 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 APOC2P02655 101 aa16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 DHPSP49366 369 aaPredicted RBP16.75■□□□□ 0.27
CCDC28A-202ENST00000611852 SCNN1BP51168 640 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms