RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 ATXN3P54252 364 aaPredicted RBP20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 MRPS22P82650 360 aaKnown RBP20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 COG7P83436 770 aa20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 CNGA3Q16281 694 aa20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 ZNF423Q2M1K9 1284 aa20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 PIGGQ5H8A4 983 aa20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 OGFRL1Q5TC84 451 aaPredicted RBP20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 CNTN4Q8IWV2 1026 aa20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 KLHDC8BQ8IXV7 354 aa20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 SERPINI1Q99574 410 aa20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 NDFIP2Q9NV92 336 aa20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 PSMD13Q9UNM6 376 aa20.48■□□□□ 0.87
SHKBP1-225ENST00000600733 ARL5CA6NH57 179 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 PMPCBO75439 489 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 CCNCP24863 283 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 FLOT2Q14254 428 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 CCL14Q16627 93 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 UGP2Q16851 508 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 ZNF280DQ6N043 979 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 ST13P4Q8IZP2 240 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 ICA1LQ8NDH6 482 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 SUDS3Q9H7L9 328 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 GLOD4Q9HC38 313 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 TMLHEQ9NVH6 421 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 VTI1BQ9UEU0 232 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 ST3GAL5Q9UNP4 418 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 FNDC1Q4ZHG4 1894 aaPredicted RBP20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 AURKAO14965 403 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 PSMD3O43242 534 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 MAFKO60675 156 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 DNAJB2P25686 324 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 CHRNA4P43681 627 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 CPT1AP50416 773 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 PRKAA2P54646 552 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 TAS2R39P59534 338 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 MS4A2Q01362 244 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 ROR2Q01974 943 aaKnown RBP20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 FOLH1Q04609 750 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 CEACAM7Q14002 265 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 CWF19L1Q69YN2 538 aaKnown RBP20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 KDM1BQ8NB78 822 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 TXNDC5Q8NBS9 432 aaKnown RBP20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 PPHLN1Q8NEY8 458 aaKnown RBP20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 ELMO2Q96JJ3 720 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 FCRL5Q96RD9 977 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 ZBTB26Q9HCK0 441 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 DTNAQ9Y4J8 743 aa20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 COPG1Q9Y678 874 aaKnown RBP20.47■□□□□ 0.87
SHKBP1-225ENST00000600733 NEMP2A6NFY4 417 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 COL6A2P12110 1019 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 PCSK1P29120 753 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 GRIA2P42262 883 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 HK2P52789 917 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 PDK3Q15120 406 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 LIN52Q52LA3 116 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 RASIP1Q5U651 963 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 ZNF470Q6ECI4 717 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 PARK7Q99497 189 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 SLC39A8Q9C0K1 460 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 OSBPL2Q9H1P3 480 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 WDR41Q9HAD4 459 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 CPA4Q9UI42 421 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 TCAF1Q9Y4C2 921 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 MSI1O43347 362 aaKnown RBP20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 PEX1O43933 1283 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 ANXA9O76027 345 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 HLA-DQB2P05538 268 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 CTSHP09668 335 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 SH2D4BQ5SQS7 431 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 LCA5Q86VQ0 697 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 HASPINQ8TF76 798 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 HEXDCQ8WVB3 486 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 IRGQQ8WZA9 623 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 IL12RB2Q99665 862 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 TRPV6Q9H1D0 765 aa20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 C6orf203Q9P0P8 240 aaPredicted RBP20.46■□□□□ 0.87
SHKBP1-225ENST00000600733 SLCO1B7G3V0H7 640 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 HNRNPLP14866 589 aaKnown RBP eCLIP20.45■□□□□ 0.861e-11■■■■□ 20.2
SHKBP1-225ENST00000600733 ARSAP15289 507 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 PGFP49763 221 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 ZNF33AQ06730 810 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 GRM2Q14416 872 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 UPP1Q16831 310 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 EML3Q32P44 896 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 CNPY1Q3B7I2 92 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 NOMO2Q5JPE7 1267 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 MAP3K21Q5TCX8 1036 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 PGAM4Q8N0Y7 254 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 DCUN1D1Q96GG9 259 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 TMEM209Q96SK2 561 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 NPAS2Q99743 824 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 SH3GL3Q99963 347 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 CCDC28BQ9BUN5 200 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 SPATA16Q9BXB7 569 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 FSD1LQ9BXM9 530 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 TRIM4Q9C037 500 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 MRPL46Q9H2W6 279 aaKnown RBP20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 POMKQ9H5K3 350 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 SFMBT1Q9UHJ3 866 aa20.45■□□□□ 0.86
SHKBP1-225ENST00000600733 FIS1Q9Y3D6 152 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms