RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 BTN2A3PQ96KV6 586 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 H3BN98 237 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 TPST1O60507 370 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 FKBP6O75344 327 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 NEK3P51956 506 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 FRG1Q14331 258 aaKnown RBP20.66■□□□□ 0.9
UPF1-207ENST00000599848 PIGZQ86VD9 579 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 ADAM32Q8TC27 787 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 UTP15Q8TED0 518 aaKnown RBP20.66■□□□□ 0.9
UPF1-207ENST00000599848 RSPH9Q9H1X1 276 aaPredicted RBP20.66■□□□□ 0.9
UPF1-207ENST00000599848 SEMA3GQ9NS98 782 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 MTRRQ9UBK8 725 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 TRIM10Q9UDY6 481 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 PCDHB11Q9Y5F2 797 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 PPRC1Q5VV67 1664 aaKnown RBP20.66■□□□□ 0.9
UPF1-207ENST00000599848 CCT8L1PA6NM43 557 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 MYL12BO14950 172 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 TRIM24O15164 1050 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 CHADO15335 359 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 TPH1P17752 444 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 IL27RAQ6UWB1 636 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 HCAR2Q8TDS4 363 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 COL26A1Q96A83 441 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 PHF21BQ96EK2 531 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 THAP1Q9NVV9 213 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 TRPS1Q9UHF7 1281 aa20.66■□□□□ 0.9
UPF1-207ENST00000599848 EOMESO95936 686 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 MMP3P08254 477 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 PTGES3Q15185 160 aaKnown RBP20.65■□□□□ 0.9
UPF1-207ENST00000599848 C17orf64Q86WR6 236 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 C19orf18Q8NEA5 215 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 HEY2Q9UBP5 337 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 WDR27A2RRH5 827 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 SERPINB7O75635 380 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 LRRC32Q14392 662 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 ITIH4Q14624 930 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 E2F4Q16254 413 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 INAQ16352 499 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 PARP15Q460N3 678 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 DNAJC9Q8WXX5 260 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 IRGQQ8WZA9 623 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 AIF1LQ9BQI0 150 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 ZNF670Q9BS34 389 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 TPRKBQ9Y3C4 175 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 HEBP2Q9Y5Z4 205 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 NEDD8-MDP1E9PL57 170 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 ADRA1DP25100 572 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 VHLP40337 213 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 CD86P42081 329 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 GALNT13Q8IUC8 556 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 OR10G6Q8NH81 332 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 TRPM4Q8TD43 1214 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 TRIM8Q9BZR9 551 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 NECTIN3Q9NQS3 549 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 VPS45Q9NRW7 570 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 ACTL7BQ9Y614 415 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 LRRIQ1Q96JM4 1722 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 OGNP20774 298 aaKnown RBP20.65■□□□□ 0.9
UPF1-207ENST00000599848 STAT5AP42229 794 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 N4BP2L1Q5TBK1 243 aaPredicted RBP20.65■□□□□ 0.9
UPF1-207ENST00000599848 FAM35AQ86V20 835 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 TMC8Q8IU68 726 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 MYO19Q96H55 970 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 GINS4Q9BRT9 223 aa20.65■□□□□ 0.9
UPF1-207ENST00000599848 CYP3A7-CYP3A51PA0A087WV96 503 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 FAM25AB3EWG3 89 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 FAM25CB3EWG5 89 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 FAM25GB3EWG6 89 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 MCIDASD6RGH6 385 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 KCNH1O95259 989 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 CCNB1P14635 433 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 ETS1P14921 441 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 LBPP18428 481 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 CYP3A7P24462 503 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 TSHZ1Q6ZSZ6 1077 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 NRSN1Q8IZ57 195 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 AHI1Q8N157 1196 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 CLP1Q92989 425 aaKnown RBP20.64■□□□□ 0.9
UPF1-207ENST00000599848 DUSP16Q9BY84 665 aa20.64■□□□□ 0.9
UPF1-207ENST00000599848 ZNF214Q9UL59 606 aaPredicted RBP20.64■□□□□ 0.9
UPF1-207ENST00000599848 TCRBV5S4A2TA0A5A2 114 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 AQP5P55064 265 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 IRX1P78414 480 aaPredicted RBP20.64■□□□□ 0.89
UPF1-207ENST00000599848 ACAP2Q15057 778 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 ZNF786Q8N393 782 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 ASZ1Q8WWH4 475 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 KCNK1O00180 336 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 OTCP00480 354 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 PFKMP08237 780 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 HSD17B3P37058 310 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 HK2P52789 917 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 WDR59Q6PJI9 974 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 COPS5Q92905 334 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 ARHGEF3Q9NR81 526 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 SNX13Q9Y5W8 968 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 E9PCH4 1651 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 AP3D1O14617 1153 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 CASRP41180 1078 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 FIG4Q92562 907 aa20.64■□□□□ 0.89
UPF1-207ENST00000599848 SLC38A2Q96QD8 506 aa20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms