RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 IL12RB2Q99665 862 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 TM6SF2Q9BZW4 377 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 PCED1AQ9H1Q7 454 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 TNKS2Q9H2K2 1166 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 PABPC3Q9H361 631 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 MTG2Q9H4K7 406 aa16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 POLR3BQ9NW08 1133 aaPredicted RBP16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 TPX2Q9ULW0 747 aaKnown RBP16.8■□□□□ 0.28
SHKBP1-219ENST00000599575 CKAP5Q14008 2032 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 PECAM1P16284 738 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 TCP1P17987 556 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 FNTBP49356 437 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 TPMTP51580 245 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 OTUD4Q01804 1114 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 TCF15Q12870 199 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 HEATR6Q6AI08 1181 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 KIAA1324Q6UXG2 1013 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 NPNTQ6UXI9 565 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 RYBPQ8N488 228 aaPredicted RBP16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 NETO2Q8NC67 525 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 TSEN2Q8NCE0 465 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 PRSS33Q8NF86 280 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 PIP4K2CQ8TBX8 421 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 FAM131CQ96AQ9 280 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 NUDCD1Q96RS6 583 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 HDAC8Q9BY41 377 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 KDM4CQ9H3R0 1056 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 ATP13A3Q9H7F0 1226 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 SGK2Q9HBY8 427 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 DYRK4Q9NR20 520 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 RBM22Q9NW64 420 aaKnown RBP eCLIP16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 DKK3Q9UBP4 350 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 TRHDEQ9UKU6 1024 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 SNX12Q9UMY4 172 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 WASF2Q9Y6W5 498 aa16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 MYO18AQ92614 2054 aaKnown RBP16.79■□□□□ 0.28
SHKBP1-219ENST00000599575 CACNA1IQ9P0X4 2223 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 CACNA1HO95180 2353 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 BCLAF3A2AJT9 711 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 CFAP69A5D8W1 941 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 KRIT1O00522 736 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 ENC1O14682 589 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 BNIP3LO60238 219 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 LEFTY1O75610 366 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 RPP40O75818 363 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 STK10O94804 968 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 MAP3K6O95382 1288 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 RBP3P10745 1247 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 CR2P20023 1033 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 ITGB7P26010 798 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 SERPINA4P29622 427 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 EIF3EP60228 445 aaKnown RBP16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 LLGL1Q15334 1064 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 MAP7D1Q3KQU3 841 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 TEX44Q53QW1 395 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 SRLQ86TD4 932 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 RASGEF1CQ8N431 466 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 HTR3CQ8WXA8 447 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 RAB7BQ96AH8 199 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 OMDQ99983 421 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 HERPUD2Q9BSE4 406 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 SAE1Q9UBE0 346 aaPredicted RBP16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 ATP8A1Q9Y2Q0 1164 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 ACTL7AQ9Y615 435 aa16.78■□□□□ 0.28
SHKBP1-219ENST00000599575 CTAGE9A4FU28 777 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 H0Y858 1186 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 H7C0C1 242 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 CEP104O60308 925 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 SOCS5O75159 536 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 JCHAINP01591 159 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 CA4P22748 312 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 CD6P30203 668 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 STIP1P31948 543 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 ATP5OP48047 213 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 PSMD8P48556 350 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 PXNP49023 591 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 ETF1P62495 437 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 POLR2LP62875 67 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 SLC14A2Q15849 920 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 ZNF805Q5CZA5 627 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 ARSIQ5FYB1 569 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 PAPD7Q5XG87 772 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 AADACL2Q6P093 401 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 DRICH1Q6PGQ1 229 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 BRAT1Q6PJG6 821 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 GDPD4Q6W3E5 623 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 ZC3H18Q86VM9 953 aaKnown RBP16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 ZSCAN30Q86W11 494 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 CHST14Q8NCH0 376 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 CADM4Q8NFZ8 388 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 SLC35B2Q8TB61 432 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 PPP1R2P1Q96PQ5 205 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 NAPGQ99747 312 aaPredicted RBP16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 TPSD1Q9BZJ3 242 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 BTBD1Q9H0C5 482 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 ZDHHC6Q9H6R6 413 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 FBXL12Q9NXK8 326 aa16.77■□□□□ 0.28
SHKBP1-219ENST00000599575 KCNK1O00180 336 aa16.76■□□□□ 0.27
SHKBP1-219ENST00000599575 KPNA3O00505 521 aaPredicted RBP16.76■□□□□ 0.27
SHKBP1-219ENST00000599575 MID1O15344 667 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms