RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 TBC1D3KA0A087X1G2 549 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 TBC1D3FA6NER0 549 aaPredicted RBP14.07□□□□□ -0.16
UPF1-205ENST00000598209 C10orf142B7Z368 130 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 TBC1D3LB9A6J9 549 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 KRIT1O00522 736 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 BCAT2O15382 392 aaPredicted RBP14.07□□□□□ -0.16
UPF1-205ENST00000598209 POP4O95707 220 aaKnown RBP14.07□□□□□ -0.16
UPF1-205ENST00000598209 IGSF6O95976 241 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 TBC1D3HP0C7X1 549 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 SDHBP21912 280 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 CD27P26842 260 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 SERPINB6P35237 376 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 ID4P47928 161 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 CCR5P51681 352 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 LIMK1P53667 647 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 IL10RBQ08334 325 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 CCDC15Q0P6D6 951 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 MYLK3Q32MK0 819 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 STPG1Q5TH74 334 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 TBC1D3GQ6DHY5 549 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 TBC1D3CQ6IPX1 549 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 RAD9BQ6WBX8 426 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 ERN2Q76MJ5 926 aaKnown RBP14.07□□□□□ -0.16
UPF1-205ENST00000598209 MAP7D3Q8IWC1 876 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 TBC1D3Q8IZP1 549 aaPredicted RBP14.07□□□□□ -0.16
UPF1-205ENST00000598209 C1orf216Q8TAB5 229 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 LRIG1Q96JA1 1093 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 BAG1Q99933 345 aaPredicted RBP14.07□□□□□ -0.16
UPF1-205ENST00000598209 ZNF670Q9BS34 389 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 HDAC8Q9BY41 377 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 IPO11Q9UI26 975 aaKnown RBP14.07□□□□□ -0.16
UPF1-205ENST00000598209 SLCO1B1Q9Y6L6 691 aa14.07□□□□□ -0.16
UPF1-205ENST00000598209 A0A1W2PPC4 97 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 SLC30A4O14863 429 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 PALMO75781 387 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 IPO7O95373 1038 aaKnown RBP14.06□□□□□ -0.16
UPF1-205ENST00000598209 ENGP17813 658 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 ITGB7P26010 798 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 SLC1A1P43005 524 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 NEK3P51956 506 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 HADHBP55084 474 aaKnown RBP14.06□□□□□ -0.16
UPF1-205ENST00000598209 TAS2R38P59533 333 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 PPP2CBP62714 309 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 PPP2CAP67775 309 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 RAD51Q06609 339 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 ANKRD20A8PQ5CZ79 823 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 TMEM139Q8IV31 216 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 PCDH19Q8TAB3 1148 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 RAPGEF5Q92565 580 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 VOPP1Q96AW1 172 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 EXOC2Q96KP1 924 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 ORAI3Q9BRQ5 295 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 OSBPL1AQ9BXW6 950 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 PREBQ9HCU5 417 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 TMEM9BQ9NQ34 198 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 DLL3Q9NYJ7 618 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 HYOU1Q9Y4L1 999 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 SPTBN4Q9H254 2564 aa14.06□□□□□ -0.16
UPF1-205ENST00000598209 ASCC3Q8N3C0 2202 aaKnown RBP14.06□□□□□ -0.16
UPF1-205ENST00000598209 A0A0A6YYK5 440 aaPredicted RBP14.05□□□□□ -0.16
UPF1-205ENST00000598209 LRRD1A4D1F6 860 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 GOLGA6L6A8MZA4 724 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 CDX4O14627 284 aaPredicted RBP14.05□□□□□ -0.16
UPF1-205ENST00000598209 SPOPO43791 374 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 MFSD11O43934 449 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 BUB1BO60566 1050 aaPredicted RBP14.05□□□□□ -0.16
UPF1-205ENST00000598209 UGT2B4P06133 528 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 SYPP08247 313 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 TNNT1P13805 278 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 COMTP21964 271 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 KDELR1P24390 212 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 MAPK8P45983 427 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 PUM1Q14671 1186 aaKnown RBP eCLIP14.05□□□□□ -0.16
UPF1-205ENST00000598209 RFTN1Q14699 578 aaPredicted RBP14.05□□□□□ -0.16
UPF1-205ENST00000598209 PAFAH1B3Q15102 231 aaKnown RBP14.05□□□□□ -0.16
UPF1-205ENST00000598209 ZNF805Q5CZA5 627 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 NCBP2-AS2Q69YL0 99 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 FBXL19Q6PCT2 694 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 PARS2Q7L3T8 475 aaKnown RBP14.05□□□□□ -0.16
UPF1-205ENST00000598209 TRIM69Q86WT6 500 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 ATPAF2Q8N5M1 289 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 ACRBPQ8NEB7 543 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 FAF2Q96CS3 445 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 RTKNQ9BST9 563 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 CINPQ9BW66 212 aaPredicted RBP14.05□□□□□ -0.16
UPF1-205ENST00000598209 GTPBP2Q9BX10 602 aaKnown RBP14.05□□□□□ -0.16
UPF1-205ENST00000598209 EBF2Q9HAK2 575 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 TM9SF3Q9HD45 589 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 TPX2Q9ULW0 747 aaKnown RBP14.05□□□□□ -0.16
UPF1-205ENST00000598209 REXO2Q9Y3B8 237 aaKnown RBP14.05□□□□□ -0.16
UPF1-205ENST00000598209 LAMA1P25391 3075 aa14.05□□□□□ -0.16
UPF1-205ENST00000598209 LRRK1Q38SD2 2015 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 RCCD1A6NED2 376 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 C16orf96A6NNT2 1141 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 C4orf47A7E2U8 309 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 ARHGAP33O14559 1287 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 INSIG1O15503 277 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 LATO43561 262 aa14.04□□□□□ -0.16
UPF1-205ENST00000598209 RNGTTO60942 597 aaKnown RBP14.04□□□□□ -0.16
UPF1-205ENST00000598209 KRT1P04264 644 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms