RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 CEP97Q8IW35 865 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 CENPIQ92674 756 aaPredicted RBP15.46■□□□□ 0.06
UPF1-204ENST00000596842 KCNN1Q92952 543 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 TRIM8Q9BZR9 551 aa15.46■□□□□ 0.06
UPF1-204ENST00000596842 FAM95CA0A1B0GW59 222 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 FBXO21O94952 628 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 CYP2C9P11712 490 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 STMN1P16949 149 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 PSMC3P17980 439 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 GLUD2P49448 558 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 ADGRE1Q14246 886 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 ADGRG6Q86SQ4 1221 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 METTL25Q8N6Q8 603 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 ZFP28Q8NHY6 868 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 DGCR14Q96DF8 476 aaKnown RBP15.45■□□□□ 0.06
UPF1-204ENST00000596842 SAC3D1A6NKF1 404 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 I6L893 689 aaPredicted RBP15.45■□□□□ 0.06
UPF1-204ENST00000596842 GRID2O43424 1007 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 AKAP10O43572 662 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 CKMT2P17540 419 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 CASP2P42575 452 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 CDH15P55291 814 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 MYLK3Q32MK0 819 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 CLEC6AQ6EIG7 209 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 GPRIN1Q7Z2K8 1008 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 UNC93AQ86WB7 457 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 OR6J1Q8NGC5 347 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 RP9Q8TA86 221 aaKnown RBP15.45■□□□□ 0.06
UPF1-204ENST00000596842 C6orf203Q9P0P8 240 aaPredicted RBP15.45■□□□□ 0.06
UPF1-204ENST00000596842 POLR2AP24928 1970 aaKnown RBP15.45■□□□□ 0.06
UPF1-204ENST00000596842 NFKBIAP25963 317 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 LSAMPQ13449 338 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 SNAPC2Q13487 334 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 KIF19Q2TAC6 998 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 SH3D19Q5HYK7 790 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 STXBP5Q5T5C0 1151 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 OGFRL1Q5TC84 451 aaPredicted RBP15.45■□□□□ 0.06
UPF1-204ENST00000596842 OR6P1Q8NGX9 317 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 TMEM79Q9BSE2 394 aa15.45■□□□□ 0.06
UPF1-204ENST00000596842 CROCCQ5TZA2 2017 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 ARHGEF37A1IGU5 675 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 FAM149AA5PLN7 773 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 IREB2P48200 963 aaKnown RBP15.44■□□□□ 0.06
UPF1-204ENST00000596842 HSFY1Q96LI6 401 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 NOL11Q9H8H0 719 aaKnown RBP15.44■□□□□ 0.06
UPF1-204ENST00000596842 COQ10BQ9H8M1 238 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 FNDC3AQ9Y2H6 1198 aaKnown RBP15.44■□□□□ 0.06
UPF1-204ENST00000596842 ZNF839A8K0R7 811 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 BOLA2-SMG1P6H3BVE0 249 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 GLDCP23378 1020 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 CDH13P55290 713 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 TAS2R39P59534 338 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 PSME3P61289 254 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 MYBPC1Q00872 1141 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 CDH17Q12864 832 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 FAM187BQ17R55 369 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 ZNF423Q2M1K9 1284 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 ARL13BQ3SXY8 428 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 ARHGAP17Q68EM7 881 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 SLC45A3Q96JT2 553 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 DUSP16Q9BY84 665 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 ZDHHC7Q9NXF8 308 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 IGSF9Q9P2J2 1179 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 GIMAP2Q9UG22 337 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 BCAP29Q9UHQ4 241 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 TTC24A2A3L6 582 aaPredicted RBP15.44■□□□□ 0.06
UPF1-204ENST00000596842 MYBPHLA2RUH7 354 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 ASB14A6NK59 587 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 MEIS3P2A8K0S8 358 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 E7ENX8 843 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 TIPRLO75663 272 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 LRIG2O94898 1065 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 TNFAIP8O95379 198 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 SFSWAPQ12872 951 aaKnown RBP15.44■□□□□ 0.06
UPF1-204ENST00000596842 SLC12A1Q13621 1099 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 KYAT1Q16773 422 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 DCAF4L1Q3SXM0 396 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 ITPRIPL1Q6GPH6 555 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 CLEC20AQ6ZU45 233 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 TMEM135Q86UB9 458 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 ZC3HC1Q86WB0 502 aaKnown RBP15.44■□□□□ 0.06
UPF1-204ENST00000596842 TMIGD2Q96BF3 282 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 ZNF512Q96ME7 567 aaPredicted RBP15.44■□□□□ 0.06
UPF1-204ENST00000596842 ZNF560Q96MR9 790 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 DCUN1D5Q9BTE7 237 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 DRC3Q9H069 523 aa15.44■□□□□ 0.06
UPF1-204ENST00000596842 SLC35E2BP0CK96 405 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 SMIM18P0DKX4 95 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 INHBCP55103 352 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 LILRA4P59901 499 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 SAPCD2Q86UD0 394 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 PIF1Q9H611 641 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 FBRSL1Q9HCM7 1045 aaKnown RBP15.43■□□□□ 0.06
UPF1-204ENST00000596842 EGFL7Q9UHF1 273 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 MID2Q9UJV3 735 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 RLFQ13129 1914 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 TMEM114B3SHH9 223 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 SUPT7LO94864 414 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 PCSK6P29122 969 aa15.43■□□□□ 0.06
UPF1-204ENST00000596842 ARL1P40616 181 aaPredicted RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms