RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 TPMTP51580 245 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 GDF10P55107 478 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 GEMIN4P57678 1058 aaKnown RBP10.72□□□□□ -0.69
LIG1-210ENST00000596332 TAS2R38P59533 333 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 ETF1P62495 437 aaKnown RBP10.72□□□□□ -0.69
LIG1-210ENST00000596332 PDK1Q15118 436 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 E2F5Q15329 346 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 TEX44Q53QW1 395 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 SLC45A4Q5BKX6 768 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 ARSIQ5FYB1 569 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 MARC1Q5VT66 337 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 ADAT2Q7Z6V5 191 aaKnown RBP10.72□□□□□ -0.69
LIG1-210ENST00000596332 SRLQ86TD4 932 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 PRPF39Q86UA1 669 aaKnown RBP10.72□□□□□ -0.69
LIG1-210ENST00000596332 KLHDC8BQ8IXV7 354 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 FAM160A2Q8N612 972 aaPredicted RBP10.72□□□□□ -0.69
LIG1-210ENST00000596332 CCNYQ8ND76 341 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 TSTD1Q8NFU3 115 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.72□□□□□ -0.69
LIG1-210ENST00000596332 HMGB4Q8WW32 186 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 C1orf54Q8WWF1 131 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 RLN3Q8WXF3 142 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 NKD2Q969F2 451 aaPredicted RBP10.72□□□□□ -0.69
LIG1-210ENST00000596332 ECHDC3Q96DC8 303 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 TEKT5Q96M29 485 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 HEPHQ9BQS7 1158 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 CEP41Q9BYV8 373 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 CPEB1Q9BZB8 566 aaKnown RBP10.72□□□□□ -0.69
LIG1-210ENST00000596332 BRD8Q9H0E9 1235 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 SP110Q9HB58 689 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 NOD2Q9HC29 1040 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 POLMQ9NP87 494 aaPredicted RBP10.72□□□□□ -0.69
LIG1-210ENST00000596332 RBM22Q9NW64 420 aaKnown RBP eCLIP10.72□□□□□ -0.69
LIG1-210ENST00000596332 DNPEPQ9ULA0 475 aa10.72□□□□□ -0.69
LIG1-210ENST00000596332 MYO15AQ9UKN7 3530 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 IGHV1OR15-9A0A0B4J2B8 117 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 HACD1B0YJ81 288 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 H0Y858 1186 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 CES2O00748 559 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 AXIN1O15169 862 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 MID1O15344 667 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 ZBTB24O43167 697 aaPredicted RBP10.71□□□□□ -0.69
LIG1-210ENST00000596332 HTRA2O43464 458 aaPredicted RBP10.71□□□□□ -0.69
LIG1-210ENST00000596332 LIASO43766 372 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 CEP104O60308 925 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 FZD6O60353 706 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 SYNCRIPO60506 623 aaKnown RBP10.71□□□□□ -0.69
LIG1-210ENST00000596332 CACNA1HO95180 2353 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 POP4O95707 220 aaKnown RBP10.71□□□□□ -0.69
LIG1-210ENST00000596332 RBP3P10745 1247 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 ITIH2P19823 946 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 BCKDHBP21953 392 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 SLC8A1P32418 973 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 MMP13P45452 471 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 EIF3EP60228 445 aaKnown RBP10.71□□□□□ -0.69
LIG1-210ENST00000596332 RHOAP61586 193 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 SKOR1P84550 965 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 DSC2Q02487 901 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 PTPRRQ15256 657 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 CST6Q15828 149 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 PIP5KL1Q5T9C9 394 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 HEATR6Q6AI08 1181 aaKnown RBP10.71□□□□□ -0.69
LIG1-210ENST00000596332 TTC27Q6P3X3 843 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 LONP2Q86WA8 852 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 ZNF354CQ86Y25 554 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 CAMK1DQ8IU85 385 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 ZNF567Q8N184 647 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 GLIS1Q8NBF1 620 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 PIP4K2CQ8TBX8 421 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 ACTRT1Q8TDG2 376 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 TFB1MQ8WVM0 346 aaKnown RBP10.71□□□□□ -0.69
LIG1-210ENST00000596332 SPOCK2Q92563 424 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 RTP4Q96DX8 246 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 SIPA1Q96FS4 1042 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 PBKQ96KB5 322 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 NUDCD1Q96RS6 583 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 NEUROG2Q9H2A3 272 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 PABPC3Q9H361 631 aaKnown RBP10.71□□□□□ -0.69
LIG1-210ENST00000596332 FBRSQ9HAH7 460 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 NT5MQ9NPB1 228 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 WSB2Q9NYS7 404 aaPredicted RBP10.71□□□□□ -0.69
LIG1-210ENST00000596332 SEPT3Q9UH03 358 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 AMACRQ9UHK6 382 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 RAPGEFL1Q9UHV5 662 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 INVSQ9Y283 1065 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 NEU2Q9Y3R4 380 aa10.71□□□□□ -0.69
LIG1-210ENST00000596332 VPS13AQ96RL7 3174 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 TSPAN11A1L157 253 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 BNIP3LO60238 219 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 PIGNO95427 931 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 TIMP2P16035 220 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 ACSL1P33121 698 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 RENBPP51606 427 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 SNRPD1P62314 119 aaKnown RBP10.7□□□□□ -0.7
LIG1-210ENST00000596332 ZBTB16Q05516 673 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 AP1B1Q10567 949 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 CNTN1Q12860 1018 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 TRAF2Q12933 501 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 STARD3Q14849 445 aa10.7□□□□□ -0.7
LIG1-210ENST00000596332 CCNG2Q16589 344 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms