RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 BIRC7Q96CA5 298 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 CINPQ9BW66 212 aaPredicted RBP15.26■□□□□ 0.03
UPF1-202ENST00000594243 NUSAP1Q9BXS6 441 aaKnown RBP15.26■□□□□ 0.03
UPF1-202ENST00000594243 HDAC8Q9BY41 377 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 LACRTQ9GZZ8 138 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 ZDHHC6Q9H6R6 413 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 ZBTB32Q9Y2Y4 487 aaPredicted RBP15.26■□□□□ 0.03
UPF1-202ENST00000594243 MFHAS1Q9Y4C4 1052 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 HYOU1Q9Y4L1 999 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 DUSP10Q9Y6W6 482 aa15.26■□□□□ 0.03
UPF1-202ENST00000594243 PRR5-ARHGAP8B1AHC4 643 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 ARHGAP6O43182 974 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 PLRG1O43660 514 aaKnown RBP15.25■□□□□ 0.03
UPF1-202ENST00000594243 NRDCO43847 1150 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 MAFKO60675 156 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 FSBPO95073 299 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 KRT1P04264 644 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 ZFXP17010 805 aaPredicted RBP15.25■□□□□ 0.03
UPF1-202ENST00000594243 ITGB7P26010 798 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 MAOBP27338 520 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 CSNK1DP48730 415 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 ARHGAP8P85298 464 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 NSUN2Q08J23 767 aaKnown RBP eCLIP15.25■□□□□ 0.03
UPF1-202ENST00000594243 LBRQ14739 615 aaKnown RBP15.25■□□□□ 0.03
UPF1-202ENST00000594243 AASDHQ4L235 1098 aaPredicted RBP15.25■□□□□ 0.03
UPF1-202ENST00000594243 ATXN7L2Q5T6C5 722 aaPredicted RBP15.25■□□□□ 0.03
UPF1-202ENST00000594243 NCBP2-AS2Q69YL0 99 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 FBXL19Q6PCT2 694 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 SLC23A3Q6PIS1 610 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 NCEH1Q6PIU2 408 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 ARHGAP36Q6ZRI8 547 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 ERN2Q76MJ5 926 aaKnown RBP15.25■□□□□ 0.03
UPF1-202ENST00000594243 TP53INP2Q8IXH6 220 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 BBS5Q8N3I7 341 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 KIAA1524Q8TCG1 905 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 SNX19Q92543 992 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 ARRDC3Q96B67 414 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 RNF25Q96BH1 459 aaPredicted RBP15.25■□□□□ 0.03
UPF1-202ENST00000594243 CPEB1Q9BZB8 566 aaKnown RBP15.25■□□□□ 0.03
UPF1-202ENST00000594243 LHX3Q9UBR4 397 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 EVLQ9UI08 416 aaPredicted RBP15.25■□□□□ 0.03
UPF1-202ENST00000594243 EIF2B4Q9UI10 523 aaKnown RBP15.25■□□□□ 0.03
UPF1-202ENST00000594243 SALL4Q9UJQ4 1053 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 THADAQ6YHU6 1953 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 FRYLO94915 3013 aa15.25■□□□□ 0.03
UPF1-202ENST00000594243 ATXN2Q99700 1313 aaKnown RBP15.24■□□□□ 0.03
UPF1-202ENST00000594243 A0A1B0GTW7 788 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 C3orf70A6NLC5 250 aaPredicted RBP15.24■□□□□ 0.03
UPF1-202ENST00000594243 PLK4O00444 970 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 ZRANB2O95218 330 aaKnown RBP eCLIP15.24■□□□□ 0.03
UPF1-202ENST00000594243 SERPINF2P08697 491 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 MX2P20592 715 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 SDHBP21912 280 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 CD27P26842 260 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 CCR5P51681 352 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 NEK3P51956 506 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 SF3A2Q15428 464 aaKnown RBP15.24■□□□□ 0.03
UPF1-202ENST00000594243 ZNF805Q5CZA5 627 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 TRIM61Q5EBN2 209 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 AGBL4Q5VU57 503 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 TIGD7Q6NT04 549 aaPredicted RBP15.24■□□□□ 0.03
UPF1-202ENST00000594243 NEK5Q6P3R8 708 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 GDPD4Q6W3E5 623 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 LRRC8AQ8IWT6 810 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 RCOR2Q8IZ40 523 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 PQLC3Q8N755 202 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 TSEN2Q8NCE0 465 aaKnown RBP15.24■□□□□ 0.03
UPF1-202ENST00000594243 OR6K2Q8NGY2 324 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 PSKH2Q96QS6 385 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 DESI2Q9BSY9 194 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 MIR1-1HGQ9H1L0 117 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 SMOC1Q9H4F8 434 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 PREBQ9HCU5 417 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 SEPT3Q9UH03 358 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 SLC6A14Q9UN76 642 aa15.24■□□□□ 0.03
UPF1-202ENST00000594243 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.24■□□□□ 0.03
UPF1-202ENST00000594243 NYNRINQ9P2P1 1898 aaKnown RBP15.23■□□□□ 0.03
UPF1-202ENST00000594243 PATE3B3GLJ2 98 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 RNF103O00237 685 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 APOL1O14791 398 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 MFSD11O43934 449 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 CFIP05156 583 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 CCNCP24863 283 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 GKP32189 559 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 HSPA9P38646 679 aaKnown RBP15.23■□□□□ 0.03
UPF1-202ENST00000594243 GARSP41250 739 aaKnown RBP15.23■□□□□ 0.03
UPF1-202ENST00000594243 IRX4P78413 519 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 SLC10A7Q0GE19 358 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 GALNT2Q10471 571 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 PIP5KL1Q5T9C9 394 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 MARC1Q5VT66 337 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 SLC9A4Q6AI14 798 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 PRPF39Q86UA1 669 aaKnown RBP15.23■□□□□ 0.03
UPF1-202ENST00000594243 KATNAL2Q8IYT4 538 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 SYCE1Q8N0S2 351 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 HCAR2Q8TDS4 363 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 RAB7BQ96AH8 199 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 EXOC2Q96KP1 924 aa15.23■□□□□ 0.03
UPF1-202ENST00000594243 ZNF830Q96NB3 372 aaPredicted RBP15.23■□□□□ 0.03
UPF1-202ENST00000594243 KLHL32Q96NJ5 620 aa15.23■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms