RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	UTP4	Q969X6	686 aa	Known RBP	15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	CFAP36	Q96G28	342 aa		15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	NR1H4	Q96RI1	486 aa	Predicted RBP	15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	EMILIN2	Q9BXX0	1053 aa		15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	SUDS3	Q9H7L9	328 aa	Predicted RBP	15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	TLR9	Q9NR96	1032 aa		15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	SMPD4	Q9NXE4	827 aa		15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	TBK1	Q9UHD2	729 aa		15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	SLC24A2	Q9UI40	661 aa		15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	STOML2	Q9UJZ1	356 aa		15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	STARD13	Q9Y3M8	1113 aa		15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	USH1C	Q9Y6N9	552 aa		15.64	■□□□□ 0.09
DDX39A-209	ENST00000589318	TMEM120B	A0PK00	339 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	ERI2	A8K979	691 aa	Known RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	POC1B-GALNT4	F8VUJ3	575 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	GLUD1	P00367	558 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	LRG1	P02750	347 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	IRF1	P10914	325 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	MBL2	P11226	248 aa	Predicted RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	GABRR2	P28476	465 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	OR1E1	P30953	314 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	CLCN4	P51793	760 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	POLE2	P56282	527 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	GEMIN4	P57678	1058 aa	Known RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	RPS24	P62847	133 aa	Known RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	CYP4F8	P98187	520 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	SFSWAP	Q12872	951 aa	Known RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	PABPC1L	Q4VXU2	614 aa	Known RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	C9orf50	Q5SZB4	431 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	UNC5A	Q6ZN44	842 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	PRPF39	Q86UA1	669 aa	Known RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	ARL14EP	Q8N8R7	260 aa	Predicted RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	FAM13C	Q8NE31	585 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	OR52K2	Q8NGK3	314 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	SLC22A17	Q8WUG5	538 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	ARHGEF2	Q92974	986 aa	Known RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	GBP5	Q96PP8	586 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	TUBB6	Q9BUF5	446 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	MTIF3	Q9H2K0	278 aa	Known RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	TLE6	Q9H808	572 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	PPCS	Q9HAB8	311 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	GLOD4	Q9HC38	313 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	TRPC7	Q9HCX4	862 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	IL1RAPL1	Q9NZN1	696 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	RWDD3	Q9Y3V2	267 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	ZFP37	Q9Y6Q3	630 aa	Predicted RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	HELZ	P42694	1942 aa	Known RBP	15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	ATG2A	Q2TAZ0	1938 aa		15.63	■□□□□ 0.09
DDX39A-209	ENST00000589318	LAMA3	Q16787	3333 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	GRXCR1	A8MXD5	290 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	TRDMT1	O14717	391 aa	Known RBP	15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	RAMP2	O60895	175 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	USP12	O75317	370 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	CREB1	P16220	341 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	MGAT1	P26572	445 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	IRS1	P35568	1242 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	ACVRL1	P37023	503 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	YBEY	P58557	167 aa	Predicted RBP	15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	CRADD	P78560	199 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	UBE3A	Q05086	875 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	SERINC3	Q13530	473 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	PARP15	Q460N3	678 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	ADGRF1	Q5T601	910 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	OR52K1	Q8NGK4	314 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	SPATA22	Q8NHS9	363 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	FCRL5	Q96RD9	977 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	TGS1	Q96RS0	853 aa	Known RBP	15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	LBHD1	Q9BQE6	289 aa	Predicted RBP	15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	CASS4	Q9NQ75	786 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	UBP1	Q9NZI7	540 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	NOTCH4	Q99466	2003 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	GRM6	O15303	877 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	SESN2	P58004	480 aa	Predicted RBP	15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	SMAD3	P84022	425 aa	Known RBP	15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	HNRNPD	Q14103	355 aa	Known RBP	15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	POLD3	Q15054	466 aa	Predicted RBP	15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	KLHL38	Q2WGJ6	581 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	KBTBD12	Q3ZCT8	623 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	STEAP4	Q687X5	459 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318		Q6ZNB5	142 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	TEX26	Q8N6G2	289 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	PPFIBP2	Q8ND30	876 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	LRRC8C	Q8TDW0	803 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	DCAKD	Q8WVC6	231 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	PAFAH2	Q99487	392 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	HTATIP2	Q9BUP3	242 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	RETREG1	Q9H6L5	497 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	PCMTD2	Q9NV79	361 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	RBM22	Q9NW64	420 aa	Known RBP eCLIP	15.62	■□□□□ 0.09	2e-6	■□□□□ 10.6
DDX39A-209	ENST00000589318	NKIRAS1	Q9NYS0	192 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	CIDEB	Q9UHD4	219 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	LNPEP	Q9UIQ6	1025 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	MAD1L1	Q9Y6D9	718 aa		15.62	■□□□□ 0.09
DDX39A-209	ENST00000589318	MYLK	Q15746	1914 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	SDR42E2	A6NKP2	422 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	GFRA2	O00451	464 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	MT-CYB	P00156	380 aa	Predicted RBP	15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	HDC	P19113	662 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	PRKCH	P24723	683 aa		15.61	■□□□□ 0.09
DDX39A-209	ENST00000589318	STX2	P32856	288 aa		15.61	■□□□□ 0.09

Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms