RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 FIBINQ8TAL6 211 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 UHMK1Q8TAS1 419 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 WFIKKN2Q8TEU8 576 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 SMARCD2Q92925 531 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 ZNF669Q96BR6 464 aaPredicted RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 ZNF707Q96C28 371 aaPredicted RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 TCEAL4Q96EI5 215 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 PGM2Q96G03 612 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 LRCH3Q96II8 777 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 NECTIN4Q96NY8 510 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 EBNA1BP2Q99848 306 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 FICDQ9BVA6 458 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 ADGRE3Q9BY15 652 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 SLC2A11Q9BYW1 496 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 IQCGQ9H095 443 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 SMG9Q9H0W8 520 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 CNOT10Q9H9A5 744 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 ZFP14Q9HCL3 533 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 SPHK2Q9NRA0 654 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 DUS2Q9NX74 493 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 CLDND1Q9NY35 253 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 ZFATQ9P243 1243 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 FETUBQ9UGM5 382 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 SLC24A2Q9UI40 661 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 TSR3Q9UJK0 312 aaKnown RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 GGA2Q9UJY4 613 aa6.28□□□□□ -1.4
LIG3-206ENST00000586058 MUC22E2RYF6 1773 aaPredicted RBP6.28□□□□□ -1.4
LIG3-206ENST00000586058 A0A0D9SEW6 157 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 A0A1W2PQ67 120 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 TCRBV7S3A2A0A539 114 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 J3KR12 359 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 ALOX15BO15296 676 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 RRP9O43818 475 aaKnown RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 ATP9BO43861 1147 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 KRT38O76015 456 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 USP1O94782 785 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 TMCC1O94876 653 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 PRAMEF12O95522 483 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 CRTAMO95727 393 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 ASLP04424 464 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 ATP5BP06576 529 aaKnown RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 ADH5P11766 374 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 PABPC1P11940 636 aaKnown RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 TYRP14679 529 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 NR1D1P20393 614 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 IGFBP4P22692 258 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 CNTFP26441 200 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 MGAT1P26572 445 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 SERPINA4P29622 427 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 HPDP32754 393 aaPredicted RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 SLCO1A2P46721 670 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 DGKGP49619 791 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 SERPINB9P50453 376 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 SERPINH1P50454 418 aaKnown RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 SCNN1BP51168 640 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 MAXP61244 160 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 SNRPD1P62314 119 aaKnown RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 TNK2Q07912 1038 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 SLC10A7Q0GE19 358 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 UGP2Q16851 508 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 LONRF1Q17RB8 773 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 KCTD19Q17RG1 926 aaPredicted RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 PLEKHG6Q3KR16 790 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 PCID2Q5JVF3 399 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 HP1BP3Q5SSJ5 553 aaPredicted RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 FNBP1LQ5T0N5 605 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 PDPK2PQ6A1A2 396 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 CXorf57Q6NSI4 855 aaKnown RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 TMEM184AQ6ZMB5 413 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 OTOP3Q7RTS5 596 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 LRRC6Q86X45 466 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 NPAS3Q8IXF0 933 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 TP53INP2Q8IXH6 220 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 IQCKQ8N0W5 287 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 MICALL1Q8N3F8 863 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 RYBPQ8N488 228 aaPredicted RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 TEX26Q8N6G2 289 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 OTUD6BQ8N6M0 293 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 C12orf76Q8N812 135 aaPredicted RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 SERBP1Q8NC51 408 aaKnown RBP eCLIP6.27□□□□□ -1.41
LIG3-206ENST00000586058 OR52K1Q8NGK4 314 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 OR2W6PQ8NHA6 318 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 CALML6Q8TD86 181 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 EPS8L3Q8TE67 593 aaKnown RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 FBF1Q8TES7 1133 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 OSCP1Q8WVF1 389 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 UCMAQ8WVF2 138 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 DYDC1Q8WWB3 177 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 FGF13Q92913 245 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 IRF7Q92985 503 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 RMDN1Q96DB5 314 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 IMP4Q96G21 291 aaKnown RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 FEM1CQ96JP0 617 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 TSNARE1Q96NA8 513 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 PSKH2Q96QS6 385 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 NUDCD1Q96RS6 583 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 SRPK1Q96SB4 655 aaKnown RBP6.27□□□□□ -1.41
LIG3-206ENST00000586058 SMC6Q96SB8 1091 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 PAFAH2Q99487 392 aa6.27□□□□□ -1.41
LIG3-206ENST00000586058 SEMA3CQ99985 751 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms