RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 SEPT3Q9UH03 358 aa15.76■□□□□ 0.11
SS18-216ENST00000580751 CFAP69A5D8W1 941 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 MCF2LO15068 1137 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 AXIN1O15169 862 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 MATN3O15232 486 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 BNIP3LO60238 219 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 ZNF821O75541 412 aaPredicted RBP15.75■□□□□ 0.11
SS18-216ENST00000580751 IGSF6O95976 241 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 SP9P0CG40 484 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 C7P10643 843 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 PECAM1P16284 738 aaPredicted RBP15.75■□□□□ 0.11
SS18-216ENST00000580751 MCM3P25205 808 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 STIP1P31948 543 aaKnown RBP15.75■□□□□ 0.11
SS18-216ENST00000580751 HSPA9P38646 679 aaKnown RBP15.75■□□□□ 0.11
SS18-216ENST00000580751 PPIDQ08752 370 aaKnown RBP15.75■□□□□ 0.11
SS18-216ENST00000580751 BYSLQ13895 437 aaKnown RBP15.75■□□□□ 0.11
SS18-216ENST00000580751 HNRNPDQ14103 355 aaKnown RBP15.75■□□□□ 0.11
SS18-216ENST00000580751 ZNF235Q14590 738 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 CARD16Q5EG05 197 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 C8orf74Q6P047 294 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 KIAA1324Q6UXG2 1013 aaKnown RBP15.75■□□□□ 0.11
SS18-216ENST00000580751 NPNTQ6UXI9 565 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 LONP2Q86WA8 852 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 CCDC13Q8IYE1 715 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 STK40Q8N2I9 435 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 CCHCR1Q8TD31 782 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 PRCCQ92733 491 aaPredicted RBP15.75■□□□□ 0.11
SS18-216ENST00000580751 SIPA1Q96FS4 1042 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 PSKH2Q96QS6 385 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 FERMT1Q9BQL6 677 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 TM6SF2Q9BZW4 377 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 TNKS2Q9H2K2 1166 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 SCML1Q9UN30 329 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 HCN4Q9Y3Q4 1203 aa15.75■□□□□ 0.11
SS18-216ENST00000580751 WDFY4Q6ZS81 3184 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 C1QTNF3-AMACRE9PGA6 284 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 GAS8O95995 478 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 PEX11BO96011 259 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 DNTTP04053 509 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 PRNPP04156 253 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 ACADMP11310 421 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 PXNP49023 591 aaPredicted RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 RENBPP51606 427 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 CCNHP51946 323 aaPredicted RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 OTUD4Q01804 1114 aaKnown RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 C2orf54Q08AI8 447 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 SLC10A7Q0GE19 358 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 SFSWAPQ12872 951 aaKnown RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 CYTH1Q15438 398 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 OASLQ15646 514 aaKnown RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 TTC31Q49AM3 519 aaPredicted RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 MARC1Q5VT66 337 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 FAM46CQ5VWP2 391 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 HEATR6Q6AI08 1181 aaKnown RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 CCDC137Q6PK04 289 aaKnown RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 DPY19L3Q6ZPD9 716 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 WDR5BQ86VZ2 330 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 RYBPQ8N488 228 aaPredicted RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 GPR161Q8N6U8 529 aaKnown RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 NOA1Q8NC60 698 aaKnown RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 ACTL9Q8TC94 416 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 MAML1Q92585 1016 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 NELL1Q92832 810 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 KRT12Q99456 494 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 LGMNQ99538 433 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 DDX47Q9H0S4 455 aaKnown RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 IRF2BPLQ9H1B7 796 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 ZSCAN32Q9NX65 697 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 SAE1Q9UBE0 346 aaPredicted RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 HECAQ9UBI9 543 aaPredicted RBP15.74■□□□□ 0.11
SS18-216ENST00000580751 LHX3Q9UBR4 397 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 AMACRQ9UHK6 382 aa15.74■□□□□ 0.11
SS18-216ENST00000580751 SHROOM3Q8TF72 1996 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 BCLAF3A2AJT9 711 aaKnown RBP15.73■□□□□ 0.11
SS18-216ENST00000580751 NDC80O14777 642 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 MTSS1O43312 755 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 ZNF217O75362 1048 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 NEBLO76041 1014 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 ECEL1O95672 775 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 ADH1BP00325 375 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 IL1BP01584 269 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 MMP13P45452 471 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 MAPK8P45983 427 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 FNTBP49356 437 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 PTPN5P54829 565 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 RPS14P62263 151 aaKnown RBP15.73■□□□□ 0.11
SS18-216ENST00000580751 DR1Q01658 176 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 RAD51Q06609 339 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 NSUN2Q08J23 767 aaKnown RBP eCLIP15.73■□□□□ 0.11
SS18-216ENST00000580751 AP1B1Q10567 949 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 PRKD1Q15139 912 aaPredicted RBP15.73■□□□□ 0.11
SS18-216ENST00000580751 CST6Q15828 149 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 USP39Q53GS9 565 aaKnown RBP15.73■□□□□ 0.11
SS18-216ENST00000580751 ZC3H14Q6PJT7 736 aaKnown RBP15.73■□□□□ 0.11
SS18-216ENST00000580751 C4orf22Q6V702 233 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 ADAT2Q7Z6V5 191 aaKnown RBP15.73■□□□□ 0.11
SS18-216ENST00000580751 CACUL1Q86Y37 369 aa15.73■□□□□ 0.11
SS18-216ENST00000580751 MMAAQ8IVH4 418 aaKnown RBP15.73■□□□□ 0.11
SS18-216ENST00000580751 CDKL3Q8IVW4 592 aaPredicted RBP15.73■□□□□ 0.11
SS18-216ENST00000580751 EIF1ADQ8N9N8 165 aaKnown RBP15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms