RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 WNT1P04628 370 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 ZNF883P0CG24 379 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 CTSKP43235 329 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 HCAR3P49019 387 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 RHOAP61586 193 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 MAPK8IP2Q13387 824 aaPredicted RBP24.28■■□□□ 1.48
SHMT1-206ENST00000579558 MYLK3Q32MK0 819 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 SETMARQ53H47 684 aaPredicted RBP24.28■■□□□ 1.48
SHMT1-206ENST00000579558 SLC45A4Q5BKX6 768 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 NEK5Q6P3R8 708 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 NETO2Q8NC67 525 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 ZNF564Q8TBZ8 553 aaPredicted RBP24.28■■□□□ 1.48
SHMT1-206ENST00000579558 LRIG1Q96JA1 1093 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 GDAP1L1Q96MZ0 367 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 SLC39A8Q9C0K1 460 aa24.28■■□□□ 1.48
SHMT1-206ENST00000579558 UBA2Q9UBT2 640 aaPredicted RBP24.28■■□□□ 1.48
SHMT1-206ENST00000579558 TP53BP1Q12888 1972 aaPredicted RBP24.28■■□□□ 1.48
SHMT1-206ENST00000579558 A0A1W2PQU0 124 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 SSU72P8A0A1W2PR75 194 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 A0A1W2PR77 199 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 KCNK3O14649 394 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 SH3BP5O60239 455 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 PCDH8O95206 1070 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 POP4O95707 220 aaKnown RBP24.27■■□□□ 1.48
SHMT1-206ENST00000579558 IGSF6O95976 241 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 ADRB3P13945 408 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 ARL4AP40617 200 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 ADKP55263 362 aaKnown RBP24.27■■□□□ 1.48
SHMT1-206ENST00000579558 DPYSL2Q16555 572 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 FBXL19Q6PCT2 694 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 PARS2Q7L3T8 475 aaKnown RBP24.27■■□□□ 1.48
SHMT1-206ENST00000579558 NAXDQ8IW45 347 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 CTNNBL1Q8WYA6 563 aaPredicted RBP24.27■■□□□ 1.48
SHMT1-206ENST00000579558 STAU2Q9NUL3 570 aaKnown RBP eCLIP24.27■■□□□ 1.48
SHMT1-206ENST00000579558 CTTNBP2NLQ9P2B4 639 aa24.27■■□□□ 1.48
SHMT1-206ENST00000579558 KNL1Q8NG31 2342 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 J3KR12 359 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 AKR1B10O60218 316 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 PRAMEF11O60813 436 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 UGT2B4P06133 528 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 RARAP10276 462 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 PAPOLAP51003 745 aaKnown RBP24.26■■□□□ 1.47
SHMT1-206ENST00000579558 RAD51Q06609 339 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 DPYSQ14117 519 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 ASTE1Q2TB18 679 aaPredicted RBP24.26■■□□□ 1.47
SHMT1-206ENST00000579558 ZNF805Q5CZA5 627 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 HORMAD1Q86X24 394 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 TEKT4Q8WW24 435 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 KLK6Q92876 244 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 CAMK1GQ96NX5 476 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 OSBPL1AQ9BXW6 950 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 PACSIN1Q9BY11 444 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 PDFQ9HBH1 243 aa24.26■■□□□ 1.47
SHMT1-206ENST00000579558 DOCK9Q9BZ29 2069 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 H0Y8X5 98 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 DFFAO00273 331 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 H2AFZP0C0S5 128 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 SSR1P43307 286 aaKnown RBP24.25■■□□□ 1.47
SHMT1-206ENST00000579558 SLC25A11Q02978 314 aaKnown RBP24.25■■□□□ 1.47
SHMT1-206ENST00000579558 CYTH1Q15438 398 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 ZNF423Q2M1K9 1284 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 AFMIDQ63HM1 303 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 TXNRD3NBQ6F5E7 133 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 SARM1Q6SZW1 724 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 H2AFVQ71UI9 128 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 ARHGAP12Q8IWW6 846 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 NPWQ8N729 165 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 CHP1Q99653 195 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 TRIM5Q9C035 493 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 UVRAGQ9P2Y5 699 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 LHX3Q9UBR4 397 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 PCDHGB2Q9Y5G2 931 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 PCNX2A6NKB5 2137 aa24.25■■□□□ 1.47
SHMT1-206ENST00000579558 SPAARA0A1B0GVQ0 90 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 C16orf96A6NNT2 1141 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 PRAMEF26H0Y7S4 382 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 SLC31A1O15431 190 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 PRLRP16471 622 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 PMLP29590 882 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 CCT8P50990 548 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 HNRNPDQ14103 355 aaKnown RBP24.24■■□□□ 1.47
SHMT1-206ENST00000579558 STAT4Q14765 748 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 ZNF284Q2VY69 593 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 GDPD4Q6W3E5 623 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 POLNQ7Z5Q5 900 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 CNGA4Q8IV77 575 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 MFSD2AQ8NA29 543 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 SETD7Q8WTS6 366 aaKnown RBP24.24■■□□□ 1.47
SHMT1-206ENST00000579558 EXOC2Q96KP1 924 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 KLHL32Q96NJ5 620 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 SP110Q9HB58 689 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 ZFR2Q9UPR6 939 aaKnown RBP24.24■■□□□ 1.47
SHMT1-206ENST00000579558 PCDHB9Q9Y5E1 797 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 FADS3Q9Y5Q0 445 aa24.24■■□□□ 1.47
SHMT1-206ENST00000579558 TLR4O00206 839 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 AP1G1O43747 822 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 DFNA5O60443 496 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 AMPD1P23109 780 aa24.23■■□□□ 1.47
SHMT1-206ENST00000579558 SIM1P81133 766 aaPredicted RBP24.23■■□□□ 1.47
SHMT1-206ENST00000579558 SUZ12Q15022 739 aaKnown RBP24.23■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms