RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ADGRF2Q8IZF7 708 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 CMTM4Q8IZR5 234 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 OR4N4Q8N0Y3 316 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 CFAP52Q8N1V2 620 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 RNF169Q8NCN4 708 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 SLC44A5Q8NCS7 719 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 MOSPD2Q8NHP6 518 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 SUN3Q8TAQ9 357 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 ARNTL2Q8WYA1 636 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 ARRDC3Q96B67 414 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 ZNF653Q96CK0 615 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 ZDHHC12Q96GR4 267 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 INTS4Q96HW7 963 aaKnown RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 CMTM3Q96MX0 182 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 BBC3Q96PG8 261 aaPredicted RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 TRIB1Q96RU8 372 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 EIF3CQ99613 913 aaKnown RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 ENKD1Q9H0I2 346 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 MTIF3Q9H2K0 278 aaKnown RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 CXorf56Q9H5V9 222 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 OPA3Q9H6K4 179 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 SYNPO2LQ9H987 977 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 SLC35C2Q9NQQ7 365 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 EHD2Q9NZN4 543 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 SLCO3A1Q9UIG8 710 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 DRG1Q9Y295 367 aaKnown RBP6.07□□□□□ -1.44
VPS53-219ENST00000576019 SLC27A6Q9Y2P4 619 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 KNSTRNQ9Y448 316 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 ENTPD2Q9Y5L3 495 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 RAD54BQ9Y620 910 aa6.07□□□□□ -1.44
VPS53-219ENST00000576019 ARAP2Q8WZ64 1704 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 TMEM8BA6NDV4 472 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 GAGE10A6NGK3 116 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 SEC14L2O76054 403 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 PRSS23O95084 383 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 SLC4A1P02730 911 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 EIF2S1P05198 315 aaKnown RBP6.06□□□□□ -1.44
VPS53-219ENST00000576019 CA3P07451 260 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 FCER1AP12319 257 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 PLA2G2AP14555 144 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 SAT1P21673 171 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 HPDP32754 393 aaPredicted RBP6.06□□□□□ -1.44
VPS53-219ENST00000576019 GATA4P43694 442 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 CAPZA2P47755 286 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 CDH8P55286 799 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 YBX1P67809 324 aaKnown RBP6.06□□□□□ -1.44
VPS53-219ENST00000576019 ADAM8P78325 824 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 SLFN5Q08AF3 891 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 EIF2B5Q13144 721 aaKnown RBP6.06□□□□□ -1.44
VPS53-219ENST00000576019 MRPL49Q13405 166 aaKnown RBP6.06□□□□□ -1.44
VPS53-219ENST00000576019 CAMK2DQ13557 499 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 THOC5Q13769 683 aaKnown RBP6.06□□□□□ -1.44
VPS53-219ENST00000576019 TNFAIP1Q13829 316 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 ZNF805Q5CZA5 627 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 TCP11X2Q5H9J9 407 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 TMEM108Q6UXF1 575 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 GALNT7Q86SF2 657 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 SCN4BQ8IWT1 228 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 ARL6IP6Q8N6S5 226 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 POMGNT2Q8NAT1 580 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 NUDT10Q8NFP7 164 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 SLC22A18Q96BI1 424 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 RNFT2Q96EX2 444 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 NUDT11Q96G61 164 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 TEPSINQ96N21 525 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 WDFY2Q96P53 400 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 GBP5Q96PP8 586 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 CD180Q99467 661 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 CTDSP1Q9GZU7 261 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 ABCG4Q9H172 646 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 SUCLA2Q9P2R7 463 aaPredicted RBP6.06□□□□□ -1.44
VPS53-219ENST00000576019 RIMKLBQ9ULI2 386 aa6.06□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3DA0A087WVF3 549 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3IA0A087WXS9 549 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3EA0A087X179 549 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3KA0A087X1G2 549 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TEX13CA0A0J9YWL9 993 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 GXYLT2A0PJZ3 443 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 FRMD3A2A2Y4 597 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 OR14I1A6ND48 311 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3BA6NDS4 549 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3FA6NER0 549 aaPredicted RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 B5MCH6 92 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3LB9A6J9 549 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 BCAT2O15382 392 aaPredicted RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 IPO8O15397 1037 aaKnown RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 CTIFO43310 598 aaKnown RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 STC2O76061 302 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 MED26O95402 600 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TBC1D3HP0C7X1 549 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 LYL1P12980 280 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 CSF2RAP15509 400 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 SCP2P22307 547 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 ADORA2AP29274 412 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 UQCRC1P31930 480 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 KIF5BP33176 963 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 TTKP33981 857 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 BUD31P41223 144 aaPredicted RBP6.05□□□□□ -1.44
VPS53-219ENST00000576019 GATMP50440 423 aa6.05□□□□□ -1.44
VPS53-219ENST00000576019 ADCY7P51828 1080 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms