RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 ZNF542PQ5EBM4 170 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 DNTTIP2Q5QJE6 756 aaKnown RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 C6orf118Q5T5N4 469 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 ZNF783Q6ZMS7 281 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 Q6ZSR6 202 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 PARS2Q7L3T8 475 aaKnown RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 ERICH1Q86X53 443 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 FAM131BQ86XD5 332 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 PCDH20Q8N6Y1 951 aaKnown RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 FAM181AQ8N9Y4 354 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 JOSD2Q8TAC2 188 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 CENPIQ92674 756 aaPredicted RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 IFT43Q96FT9 208 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 PCDHB18PQ96TA0 734 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 SLC17A9Q9BYT1 436 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 CEP44Q9C0F1 390 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 NOL6Q9H6R4 1146 aaKnown RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 SYNCQ9H7C4 482 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 METTL5Q9NRN9 209 aaKnown RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 PPARGC1AQ9UBK2 798 aaKnown RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 STAP1Q9ULZ2 295 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 CLCA2Q9UQC9 943 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 ZKSCAN5Q9Y2L8 839 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 FCF1Q9Y324 198 aaKnown RBP6.85□□□□□ -1.31
VPS53-213ENST00000572334 HS3ST3A1Q9Y663 406 aa6.85□□□□□ -1.31
VPS53-213ENST00000572334 SPTY2D1-AS1A0A0U1RR47 76 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 CXorf51AA0A1B0GTR3 108 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 TCRBV5S1A1TA0A578 114 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 C2CD4BA6NLJ0 364 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 K7ESM1 405 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 SCAMP1O15126 338 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 FFAR2O15552 330 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 AP1G1O43747 822 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 OPA1O60313 960 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 SRGAP2O75044 1071 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 PCDH8O95206 1070 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 LSM8O95777 96 aaKnown RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 PAK4O96013 591 aaPredicted RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 ITIH2P19823 946 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 MMP8P22894 467 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 ERCC5P28715 1186 aaPredicted RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 AKT2P31751 481 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 ADRA1BP35368 520 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 ABCG1P45844 678 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 CCNHP51946 323 aaPredicted RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 NEK3P51956 506 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 HDAC4P56524 1084 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 BPIFB4P59827 614 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 ATP11AP98196 1134 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 TLE3Q04726 772 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 EIF2B5Q13144 721 aaKnown RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 TBC1D25Q3MII6 688 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 CARD16Q5EG05 197 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 TCP11X2Q5H9J9 407 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 NAA35Q5VZE5 725 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 LRRC31Q6UY01 552 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 KYAT3Q6YP21 454 aaKnown RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 CLEC17AQ6ZS10 378 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 TMC6Q7Z403 805 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 PHLDB2Q86SQ0 1253 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 PLPP6Q8IY26 295 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 DRC7Q8IY82 874 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 CCDC185Q8N715 623 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 OR6K2Q8NGY2 324 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 GPT2Q8TD30 523 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 RXFP2Q8WXD0 754 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 BAP1Q92560 729 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 ARHGEF2Q92974 986 aaKnown RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 ISG20Q96AZ6 181 aaKnown RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 PRR11Q96HE9 360 aaPredicted RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 HIC2Q96JB3 615 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 APOLD1Q96LR9 279 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 LENG8Q96PV6 779 aaPredicted RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 HEPHQ9BQS7 1158 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 SPON2Q9BUD6 331 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 C1QTNF2Q9BXJ5 285 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 CALN1Q9BXU9 219 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 STK33Q9BYT3 514 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 TM6SF2Q9BZW4 377 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 ZYG11BQ9C0D3 744 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 KLC2Q9H0B6 622 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 OSBPL2Q9H1P3 480 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 TCEAL2Q9H3H9 227 aaPredicted RBP6.84□□□□□ -1.31
VPS53-213ENST00000572334 ATP13A1Q9HD20 1204 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 TMEM248Q9NWD8 314 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 NLGN3Q9NZ94 848 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 ITM2BQ9Y287 266 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 SIK3Q9Y2K2 1263 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 AK5Q9Y6K8 562 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 TENM4Q6N022 2769 aa6.84□□□□□ -1.31
VPS53-213ENST00000572334 ASH1LQ9NR48 2969 aaKnown RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 PMS2P1A4D2B8 440 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 IGLON5A6NGN9 336 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 C16orf96A6NNT2 1141 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 A6NNZ2 444 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 AREL1O15033 823 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 ATXN7O15265 892 aaPredicted RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 DXOO77932 396 aaKnown RBP6.83□□□□□ -1.32
VPS53-213ENST00000572334 GFPT2O94808 682 aa6.83□□□□□ -1.32
VPS53-213ENST00000572334 LRIG2O94898 1065 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms