RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 PPHLN1Q8NEY8 458 aaKnown RBP23.07■■□□□ 1.28
VPS53-211ENST00000571805 RP9Q8TA86 221 aaKnown RBP23.07■■□□□ 1.28
VPS53-211ENST00000571805 GDPD5Q8WTR4 605 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 PDP2Q9P2J9 529 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 PTPRDP23468 1912 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 SLCO1B7G3V0H7 640 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 SLC22A2O15244 555 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 IGHA2P01877 340 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 JUNP05412 331 aaKnown RBP23.07■■□□□ 1.28
VPS53-211ENST00000571805 CTSHP09668 335 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 PGFP49763 221 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 NUDT2P50583 147 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 BRMS1LQ5PSV4 323 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 OR10T2Q8NGX3 314 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 TUBGCP5Q96RT8 1024 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 MRM3Q9HC36 420 aaKnown RBP23.07■■□□□ 1.28
VPS53-211ENST00000571805 STK39Q9UEW8 545 aa23.07■■□□□ 1.28
VPS53-211ENST00000571805 PRPF19Q9UMS4 504 aaKnown RBP23.07■■□□□ 1.28
VPS53-211ENST00000571805 NYNRINQ9P2P1 1898 aaKnown RBP23.07■■□□□ 1.28
VPS53-211ENST00000571805 CASQ2O14958 399 aaPredicted RBP23.06■■□□□ 1.28
VPS53-211ENST00000571805 RNASEH1O60930 286 aaKnown RBP23.06■■□□□ 1.28
VPS53-211ENST00000571805 STMN1P16949 149 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 PEX2P28328 305 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 SLC1A2P43004 574 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 GEMP55040 296 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 ACAD11Q709F0 780 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 METTL23Q86XA0 190 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 LZTR1Q8N653 840 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 KYQ8NBH2 561 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 PTCD2Q8WV60 388 aaKnown RBP23.06■■□□□ 1.28
VPS53-211ENST00000571805 CCDC28BQ9BUN5 200 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 TREX1Q9NSU2 369 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 G3BP2Q9UN86 482 aaKnown RBP23.06■■□□□ 1.28
VPS53-211ENST00000571805 GTF3C5Q9Y5Q8 519 aaPredicted RBP23.06■■□□□ 1.28
VPS53-211ENST00000571805 FGF10O15520 208 aaPredicted RBP23.06■■□□□ 1.28
VPS53-211ENST00000571805 SMIM24O75264 130 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 B3GAT3O94766 335 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 HLA-DQB2P05538 268 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 ZCCHC18P0CG32 403 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 PPARGP37231 505 aaPredicted RBP23.06■■□□□ 1.28
VPS53-211ENST00000571805 XIAPP98170 497 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 CNGA3Q16281 694 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 TMEM198Q66K66 360 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 GDF6Q6KF10 455 aaPredicted RBP23.06■■□□□ 1.28
VPS53-211ENST00000571805 DSELQ8IZU8 1212 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 SPATA6LQ8N4H0 392 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 PDCD6IPQ8WUM4 868 aaKnown RBP23.06■■□□□ 1.28
VPS53-211ENST00000571805 TRIM62Q9BVG3 475 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 VCX3BQ9H321 246 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 AGO3Q9H9G7 860 aaKnown RBP23.06■■□□□ 1.28
VPS53-211ENST00000571805 ENTPD7Q9NQZ7 604 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 NLRC5Q86WI3 1866 aa23.06■■□□□ 1.28
VPS53-211ENST00000571805 PATJQ8NI35 1801 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 ENO4A6NNW6 628 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 ADSLP30566 484 aaPredicted RBP23.05■■□□□ 1.28
VPS53-211ENST00000571805 HTR7P34969 479 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 RANBP10Q6VN20 620 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 KDM1BQ8NB78 822 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 C2CD4AQ8NCU7 369 aaPredicted RBP23.05■■□□□ 1.28
VPS53-211ENST00000571805 FCRL2Q96LA5 508 aaPredicted RBP23.05■■□□□ 1.28
VPS53-211ENST00000571805 TSC22D3Q99576 134 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 UBE2OQ9C0C9 1292 aaKnown RBP23.05■■□□□ 1.28
VPS53-211ENST00000571805 CATSPERBQ9H7T0 1116 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 PIDD1Q9HB75 910 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 SFMBT1Q9UHJ3 866 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 PACSIN3Q9UKS6 424 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 CDYLQ9Y232 598 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 POMCP01189 267 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 FESP07332 822 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 TAS2R39P59534 338 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 CYLC2Q14093 348 aaPredicted RBP23.05■■□□□ 1.28
VPS53-211ENST00000571805 AFMIDQ63HM1 303 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 C16orf89Q6UX73 402 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 CASP10Q92851 521 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 MRGPRX2Q96LB1 330 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 OMDQ99983 421 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 TRPV6Q9H1D0 765 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 ABCC13Q9NSE7 274 aa23.05■■□□□ 1.28
VPS53-211ENST00000571805 RBM22Q9NW64 420 aaKnown RBP eCLIP23.05■■□□□ 1.28
VPS53-211ENST00000571805 MRPL42Q9Y6G3 142 aaKnown RBP23.05■■□□□ 1.28
VPS53-211ENST00000571805 M0QZQ0 153 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 MSI1O43347 362 aaKnown RBP23.04■■□□□ 1.28
VPS53-211ENST00000571805 PMPCBO75439 489 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 AQP4P55087 323 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 CATSPER2Q96P56 530 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 TRAPPC9Q96Q05 1148 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 VPS28Q9UK41 221 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 UQCRBP14927 111 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 CCR1P32246 355 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 MGAT3Q09327 533 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 TRIP10Q15642 601 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 SETD3Q86TU7 594 aaPredicted RBP23.04■■□□□ 1.28
VPS53-211ENST00000571805 ZNF483Q8TF39 744 aaPredicted RBP23.04■■□□□ 1.28
VPS53-211ENST00000571805 HASPINQ8TF76 798 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 UNKQ9C0B0 810 aaKnown RBP23.04■■□□□ 1.28
VPS53-211ENST00000571805 MRPL46Q9H2W6 279 aaKnown RBP23.04■■□□□ 1.28
VPS53-211ENST00000571805 SMOC2Q9H3U7 446 aa23.04■■□□□ 1.28
VPS53-211ENST00000571805 PEX1O43933 1283 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 NPHS1O60500 1241 aa23.03■■□□□ 1.28
VPS53-211ENST00000571805 CHRNA4P43681 627 aa23.03■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms