RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 PDK1Q15118 436 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 DLG2Q15700 870 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 ACCSLQ4AC99 568 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 BBS12Q6ZW61 710 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 RASSF3Q86WH2 238 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 PLD5Q8N7P1 536 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 OR2T3Q8NH03 318 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 TSGA13Q96PP4 275 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 OSBPL8Q9BZF1 889 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 UBA2Q9UBT2 640 aaPredicted RBP20.95■□□□□ 0.94
VPS53-210ENST00000571456 SLCO3A1Q9UIG8 710 aa20.95■□□□□ 0.94
VPS53-210ENST00000571456 ACACAQ13085 2346 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 PPP1R12AO14974 1030 aaPredicted RBP20.94■□□□□ 0.94
VPS53-210ENST00000571456 MFSD11O43934 449 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 CST8O60676 142 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 CCNCP24863 283 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 HSPA9P38646 679 aaKnown RBP20.94■□□□□ 0.94
VPS53-210ENST00000571456 GARSP41250 739 aaKnown RBP20.94■□□□□ 0.94
VPS53-210ENST00000571456 STK19P49842 368 aaPredicted RBP20.94■□□□□ 0.94
VPS53-210ENST00000571456 CREB5Q02930 508 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 BYSLQ13895 437 aaKnown RBP20.94■□□□□ 0.94
VPS53-210ENST00000571456 SEL1L2Q5TEA6 688 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 C22orf39Q6P5X5 142 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 TMEM92Q6UXU6 159 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 FRS2Q8WU20 508 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 ALG3Q92685 438 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 HDAC11Q96DB2 347 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 PDFQ9HBH1 243 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 CD248Q9HCU0 757 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 AMACRQ9UHK6 382 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 BPTFQ12830 3046 aa20.94■□□□□ 0.94
VPS53-210ENST00000571456 LNP1A1A4G5 178 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 WASH3PC4AMC7 463 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 APOC4-APOC2K7ER74 178 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 ZIC2O95409 532 aaPredicted RBP20.93■□□□□ 0.94
VPS53-210ENST00000571456 GSRP00390 522 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 APOC2P02655 101 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 WASP42768 502 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 RENBPP51606 427 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 SNRPD1P62314 119 aaKnown RBP20.93■□□□□ 0.94
VPS53-210ENST00000571456 ELF2Q15723 593 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 TTC13Q8NBP0 860 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 OR8D1Q8WZ84 308 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 P3H4Q92791 437 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 PTPRN2Q92932 1015 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 TRIM44Q96DX7 344 aaPredicted RBP20.93■□□□□ 0.94
VPS53-210ENST00000571456 LRIG1Q96JA1 1093 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 DUSP15Q9H1R2 295 aaPredicted RBP20.93■□□□□ 0.94
VPS53-210ENST00000571456 PRSS16Q9NQE7 514 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 TRMT1Q9NXH9 659 aaKnown RBP20.93■□□□□ 0.94
VPS53-210ENST00000571456 DTLQ9NZJ0 730 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 MSRB2Q9Y3D2 182 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 SHROOM3Q8TF72 1996 aa20.93■□□□□ 0.94
VPS53-210ENST00000571456 NAV2Q8IVL1 2488 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 TCRBV21S2A2A0A5A6 115 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 TTC34A8MYJ7 566 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 MCF2LO15068 1137 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 MAFKO60675 156 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 ZNF217O75362 1048 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 CD160O95971 181 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 MT-CO1P00395 513 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 GLDCP23378 1020 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 RAD51Q06609 339 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 HNRNPDQ14103 355 aaKnown RBP20.92■□□□□ 0.94
VPS53-210ENST00000571456 GRM3Q14832 879 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 C9orf64Q5T6V5 341 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 KIAA1211LQ6NV74 962 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 LINGO4Q6UY18 593 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 C11orf74Q86VG3 221 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 FERMT1Q9BQL6 677 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 RSPH9Q9H1X1 276 aaPredicted RBP20.92■□□□□ 0.94
VPS53-210ENST00000571456 ZDHHC4Q9NPG8 344 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 TMEM9BQ9NQ34 198 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 SEPT3Q9UH03 358 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 PYCARDQ9ULZ3 195 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 PACSIN2Q9UNF0 486 aaPredicted RBP20.92■□□□□ 0.94
VPS53-210ENST00000571456 THADAQ6YHU6 1953 aa20.92■□□□□ 0.94
VPS53-210ENST00000571456 BCLAF3A2AJT9 711 aaKnown RBP20.91■□□□□ 0.94
VPS53-210ENST00000571456 ANTXRLA6NF34 631 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 MTSS1O43312 755 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 HYAL3O43820 417 aaPredicted RBP20.91■□□□□ 0.94
VPS53-210ENST00000571456 RHOBTB1O94844 696 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 TMCC1O94876 653 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 PYGMP11217 842 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 HLA-EP13747 358 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 MAPK8P45983 427 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 GBE1Q04446 702 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 PPIDQ08752 370 aaKnown RBP20.91■□□□□ 0.94
VPS53-210ENST00000571456 NSUN2Q08J23 767 aaKnown RBP eCLIP20.91■□□□□ 0.94
VPS53-210ENST00000571456 XRCC4Q13426 336 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 RALGPS1Q5JS13 557 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 CCDC181Q5TID7 509 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 FAM46CQ5VWP2 391 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 ZNF776Q68DI1 518 aaPredicted RBP20.91■□□□□ 0.94
VPS53-210ENST00000571456 PRCCQ92733 491 aaPredicted RBP20.91■□□□□ 0.94
VPS53-210ENST00000571456 GDAP1L1Q96MZ0 367 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 OLFM3Q96PB7 478 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 PSKH2Q96QS6 385 aa20.91■□□□□ 0.94
VPS53-210ENST00000571456 BCCIPQ9P287 314 aaKnown RBP eCLIP20.91■□□□□ 0.94
VPS53-210ENST00000571456 HEY1Q9Y5J3 304 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms