RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 CALML6Q8TD86 181 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 SLC44A1Q8WWI5 657 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ATP2A3Q93084 1043 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 E2F7Q96AV8 911 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 PABPC5Q96DU9 382 aaKnown RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 IFT43Q96FT9 208 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 HMCESQ96FZ2 354 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 SGSM3Q96HU1 749 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 XPO6Q96QU8 1125 aaKnown RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 RANBP9Q96S59 729 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 C19orf43Q9BQ61 176 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 TBL1YQ9BQ87 522 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 C17orf80Q9BSJ5 609 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 DHRS4Q9BTZ2 278 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 KIFC1Q9BW19 673 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 CINPQ9BW66 212 aaPredicted RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 SLC2A11Q9BYW1 496 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 MUC3BQ9H195 1237 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 NOL6Q9H6R4 1146 aaKnown RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 TLE6Q9H808 572 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 SFXN1Q9H9B4 322 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 PIDD1Q9HB75 910 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ZNF334Q9HCZ1 680 aaPredicted RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 ATP13A1Q9HD20 1204 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 MAN1C1Q9NR34 630 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 GKN1Q9NS71 199 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 TDP1Q9NUW8 608 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 DNAJC17Q9NVM6 304 aaKnown RBP8.09□□□□□ -1.11
VPS39-213ENST00000570062 MOCS1Q9NZB8 636 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 ZNF212Q9UDV6 495 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 RIMKLBQ9ULI2 386 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 CHMP2BQ9UQN3 213 aa8.09□□□□□ -1.11
VPS39-213ENST00000570062 PLXNA3P51805 1871 aa8.09□□□□□ -1.12
VPS39-213ENST00000570062 PTPRDP23468 1912 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP8.08□□□□□ -1.12
VPS39-213ENST00000570062 GOLGA6L7A0A1B0GV03 622 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 A0A1W2PRU2 124 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 LCHNA4D1U4 455 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 FAM159BA6NKW6 160 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 POC1B-GALNT4F8VUJ3 575 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 LEFTY2O00292 366 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 GFRA2O00451 464 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 PFDN6O15212 129 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 GRM6O15303 877 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 CCL16O15467 120 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 PRPF4O43172 522 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS39-213ENST00000570062 SHOX2O60902 331 aaPredicted RBP8.08□□□□□ -1.12
VPS39-213ENST00000570062 TBL1XO60907 577 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 ZWINTO95229 277 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 PEX11BO96011 259 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 MT-ND3P03897 115 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 KLKB1P03952 638 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 CA3P07451 260 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 RHOP08100 348 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 SPATA31D3P0C874 917 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 BRAFP15056 766 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 DNAJB1P25685 340 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 NFKBIAP25963 317 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 CD68P34810 354 aaPredicted RBP8.08□□□□□ -1.12
VPS39-213ENST00000570062 CSNK1DP48730 415 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 SESN2P58004 480 aaPredicted RBP8.08□□□□□ -1.12
VPS39-213ENST00000570062 GRM3Q14832 879 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 PREPLQ4J6C6 727 aaPredicted RBP8.08□□□□□ -1.12
VPS39-213ENST00000570062 GPR158Q5T848 1215 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 GRTP1Q5TC63 336 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 KCTD16Q68DU8 428 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 PDPK2PQ6A1A2 396 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 RANBP10Q6VN20 620 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 UNC5AQ6ZN44 842 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 TIFABQ6ZNK6 161 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 SPATA31D4Q6ZUB0 917 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 GAREM2Q75VX8 874 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 B4GALNT4Q76KP1 1039 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 ZNF534Q76KX8 674 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 MARK2Q7KZI7 788 aaKnown RBP8.08□□□□□ -1.12
VPS39-213ENST00000570062 CCDC91Q7Z6B0 441 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 EXOC3L1Q86VI1 746 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 CMTM8Q8IZV2 173 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 NDUFAF2Q8N183 169 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 DCAF4L2Q8NA75 395 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 TDRD5Q8NAT2 981 aaKnown RBP8.08□□□□□ -1.12
VPS39-213ENST00000570062 SERBP1Q8NC51 408 aaKnown RBP eCLIP8.08□□□□□ -1.12
VPS39-213ENST00000570062 FIBINQ8TAL6 211 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 ACMSDQ8TDX5 336 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 EPS8L3Q8TE67 593 aaKnown RBP8.08□□□□□ -1.12
VPS39-213ENST00000570062 DDI1Q8WTU0 396 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 FOXJ1Q92949 421 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 FEM1CQ96JP0 617 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 CABS1Q96KC9 395 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 PWWP2AQ96N64 755 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 CDK15Q96Q40 435 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 PAFAH2Q99487 392 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 SPON2Q9BUD6 331 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 SLC46A2Q9BY10 475 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 ADGRE3Q9BY15 652 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 SLC28A3Q9HAS3 691 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 INTS9Q9NV88 658 aaKnown RBP8.08□□□□□ -1.12
VPS39-213ENST00000570062 OBP2AQ9NY56 170 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 LMCD1Q9NZU5 365 aa8.08□□□□□ -1.12
VPS39-213ENST00000570062 CFAP97Q9P2B7 532 aa8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms