RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 DAB2IPQ5VWQ8 1189 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 TCEAL6Q6IPX3 200 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 C22orf39Q6P5X5 142 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 Q6ZVU0 165 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 ZNF354CQ86Y25 554 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 PCDH20Q8N6Y1 951 aaKnown RBP13.68□□□□□ -0.22
CLK3-218ENST00000566926 MYRIPQ8NFW9 859 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 EXD1Q8NHP7 514 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 MAIP1Q8WWC4 291 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 TCEAL3Q969E4 200 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 ISG20Q96AZ6 181 aaKnown RBP13.68□□□□□ -0.22
CLK3-218ENST00000566926 MAGEB5Q9BZ81 275 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 NEUROG2Q9H2A3 272 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 KDM4CQ9H3R0 1056 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 PACSIN2Q9UNF0 486 aaPredicted RBP13.68□□□□□ -0.22
CLK3-218ENST00000566926 NEU3Q9UQ49 428 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 DOCK9Q9BZ29 2069 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 TRPM6Q9BX84 2022 aa13.68□□□□□ -0.22
CLK3-218ENST00000566926 ATXN2Q99700 1313 aaKnown RBP13.67□□□□□ -0.22
CLK3-218ENST00000566926 TP53BP1Q12888 1972 aaPredicted RBP13.67□□□□□ -0.22
CLK3-218ENST00000566926 GOLGA6L10A0A0M3HER8 536 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 LNP1A1A4G5 178 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 PATE3B3GLJ2 98 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 EEF2KO00418 725 aaKnown RBP13.67□□□□□ -0.22
CLK3-218ENST00000566926 KDELR3O43731 214 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 CEP104O60308 925 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 LRCH4O75427 683 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 ZRANB2O95218 330 aaKnown RBP eCLIP13.67□□□□□ -0.22
CLK3-218ENST00000566926 VAV1P15498 845 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 GLDCP23378 1020 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 SSR1P43307 286 aaKnown RBP13.67□□□□□ -0.22
CLK3-218ENST00000566926 PARP15Q460N3 678 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 CCDC70Q6NSX1 233 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 LINGO4Q6UY18 593 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 ERMP1Q7Z2K6 904 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 DGLUCYQ7Z3D6 616 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 VSIG1Q86XK7 387 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 PLPP6Q8IY26 295 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 RCOR2Q8IZ40 523 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 UMODL1-AS1Q8N2C9 162 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 ARFGAP1Q8N6T3 406 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 TMIEQ8NEW7 156 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 OR2T34Q8NGX1 318 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 PIP4K2CQ8TBX8 421 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 COG1Q8WTW3 980 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 TEKT4Q8WW24 435 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 CASKIN2Q8WXE0 1202 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 SNX19Q92543 992 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 PPP1R16AQ96I34 528 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 SNRNP25Q9BV90 132 aaKnown RBP13.67□□□□□ -0.22
CLK3-218ENST00000566926 ZDHHC5Q9C0B5 715 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 MIR1-1HGQ9H1L0 117 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 TMEM9BQ9NQ34 198 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 DYRK4Q9NR20 520 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 NDFIP2Q9NV92 336 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 PPM1HQ9ULR3 514 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 PCNX2A6NKB5 2137 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 CABIN1Q9Y6J0 2220 aa13.67□□□□□ -0.22
CLK3-218ENST00000566926 SHROOM3Q8TF72 1996 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 PCDH15Q96QU1 1955 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 CCDC188H7C350 402 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 SMAD6O43541 496 aaKnown RBP13.66□□□□□ -0.22
CLK3-218ENST00000566926 ENGP17813 658 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 MAOBP27338 520 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 CHRNA3P32297 505 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 CXCR5P32302 372 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 PTPN7P35236 360 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 ACVRL1P37023 503 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 ARL4AP40617 200 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 HCAR3P49019 387 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 DNA2P51530 1060 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 NDST2P52849 883 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 ARF5P84085 180 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 SLC25A11Q02978 314 aaKnown RBP13.66□□□□□ -0.22
CLK3-218ENST00000566926 CARD16Q5EG05 197 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 KIAA0895LQ68EN5 471 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP13.66□□□□□ -0.22
CLK3-218ENST00000566926 MAP7D3Q8IWC1 876 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 AADATQ8N5Z0 425 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 OR2A12Q8NGT7 310 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 OR14C36Q8NHC7 312 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 ALG3Q92685 438 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 KRT35Q92764 455 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 CAPZA3Q96KX2 299 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 PEBP4Q96S96 227 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 CARD6Q9BX69 1037 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 C6orf106Q9H6K1 298 aaPredicted RBP13.66□□□□□ -0.22
CLK3-218ENST00000566926 ZWILCHQ9H900 591 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 CAPN10Q9HC96 672 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 IL36AQ9UHA7 158 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 EIF2B4Q9UI10 523 aaKnown RBP13.66□□□□□ -0.22
CLK3-218ENST00000566926 EFR3BQ9Y2G0 817 aa13.66□□□□□ -0.22
CLK3-218ENST00000566926 ZBTB32Q9Y2Y4 487 aaPredicted RBP13.66□□□□□ -0.22
CLK3-218ENST00000566926 PLXNA2O75051 1894 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 ANKRD36A6QL64 1941 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 FAM47DPA6NHR8 397 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 ARHGAP42A6NI28 874 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 ZNF487B1APH4 448 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 RASA4BC9J798 803 aa13.65□□□□□ -0.22
CLK3-218ENST00000566926 H3BRJ5 948 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms