RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PHOX2BQ99453 314 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 HDAC8Q9BY41 377 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 CPEB1Q9BZB8 566 aaKnown RBP13.2□□□□□ -0.3
NEDD8-208ENST00000560427 CD93Q9NPY3 652 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 GUCA1BQ9UMX6 200 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 INVSQ9Y283 1065 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 PPP2R2CQ9Y2T4 447 aa13.2□□□□□ -0.3
NEDD8-208ENST00000560427 A0A0U1RQJ8 604 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 LRRC72A6NJI9 287 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 KPNA3O00505 521 aaPredicted RBP13.19□□□□□ -0.3
NEDD8-208ENST00000560427 MATN3O15232 486 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 ZSCAN12O43309 604 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 FOXD2O60548 495 aaPredicted RBP13.19□□□□□ -0.3
NEDD8-208ENST00000560427 GFRA3O60609 400 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 LEFTY1O75610 366 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 SEMA4FO95754 770 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 PEX11BO96011 259 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 PEX5P50542 639 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 AP1S1P61966 158 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 PPIDQ08752 370 aaKnown RBP13.19□□□□□ -0.3
NEDD8-208ENST00000560427 CCDC173Q0VFZ6 552 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 ZNF235Q14590 738 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 PDK1Q15118 436 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 ARSIQ5FYB1 569 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 WDR45BQ5MNZ6 344 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 SYCP2LQ5T4T6 812 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 MARC1Q5VT66 337 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 ASCL5Q7RTU5 278 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 RABEPKQ7Z6M1 372 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 ZSCAN30Q86W11 494 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 TP53INP2Q8IXH6 220 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 RYBPQ8N488 228 aaPredicted RBP13.19□□□□□ -0.3
NEDD8-208ENST00000560427 TEX26Q8N6G2 289 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 GPR161Q8N6U8 529 aaKnown RBP13.19□□□□□ -0.3
NEDD8-208ENST00000560427 FRMD1Q8N878 549 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 TRIM58Q8NG06 486 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 OR2T34Q8NGX1 318 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 GRIN3AQ8TCU5 1115 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 HCAR2Q8TDS4 363 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 RAB7BQ96AH8 199 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 HES6Q96HZ4 224 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 OLFM3Q96PB7 478 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 MGME1Q9BQP7 344 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 ZDHHC6Q9H6R6 413 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 NCDNQ9UBB6 729 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 SARDHQ9UL12 918 aa13.19□□□□□ -0.3
NEDD8-208ENST00000560427 KRIT1O00522 736 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 PLRG1O43660 514 aaKnown RBP13.18□□□□□ -0.3
NEDD8-208ENST00000560427 CST8O60676 142 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 ZNF189O75820 626 aaPredicted RBP13.18□□□□□ -0.3
NEDD8-208ENST00000560427 FTCDO95954 541 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 ACSL1P33121 698 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 MMP13P45452 471 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 SUOXP51687 545 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 NEK3P51956 506 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 ADPRHP54922 357 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 SLC10A7Q0GE19 358 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 ZNF805Q5CZA5 627 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 ATXN7L2Q5T6C5 722 aaPredicted RBP13.18□□□□□ -0.3
NEDD8-208ENST00000560427 AGBL4Q5VU57 503 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 PEAR1Q5VY43 1037 aaPredicted RBP13.18□□□□□ -0.3
NEDD8-208ENST00000560427 NEK5Q6P3R8 708 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 GDPD4Q6W3E5 623 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 BBS12Q6ZW61 710 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 ERN2Q76MJ5 926 aaKnown RBP13.18□□□□□ -0.3
NEDD8-208ENST00000560427 CYP2U1Q7Z449 544 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 FAM124AQ86V42 546 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 CCDC13Q8IYE1 715 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 NETO2Q8NC67 525 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 TSEN2Q8NCE0 465 aaKnown RBP13.18□□□□□ -0.3
NEDD8-208ENST00000560427 ALG3Q92685 438 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 ZNF641Q96N77 438 aaPredicted RBP13.18□□□□□ -0.3
NEDD8-208ENST00000560427 GPR174Q9BXC1 333 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 NEUROG2Q9H2A3 272 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 ATP13A3Q9H7F0 1226 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 PREBQ9HCU5 417 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 LZTFL1Q9NQ48 299 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 DKK3Q9UBP4 350 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 SERGEFQ9UGK8 458 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 SUSD2Q9UGT4 822 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 HEY1Q9Y5J3 304 aa13.18□□□□□ -0.3
NEDD8-208ENST00000560427 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 A0A1W2PQ67 120 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 BCLAF3A2AJT9 711 aaKnown RBP13.17□□□□□ -0.3
NEDD8-208ENST00000560427 METTL12A8MUP2 240 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 C10orf142B7Z368 130 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 APOC4-APOC2K7ER74 178 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 MTSS1O43312 755 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 AP1G1O43747 822 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 TJP3O95049 919 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 APOC2P02655 101 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 KRT10P13645 584 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 CR2P20023 1033 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 CES1P23141 567 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 SERPINA4P29622 427 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 NUDT1P36639 197 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 DHPSP49366 369 aaPredicted RBP13.17□□□□□ -0.3
NEDD8-208ENST00000560427 CCR5P51681 352 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 DYNLT1P63172 113 aa13.17□□□□□ -0.3
NEDD8-208ENST00000560427 IFI35P80217 286 aaPredicted RBP13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms