RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 CHRNB1P11230 501 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 NFKB1P19838 968 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 PRKCHP24723 683 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 TARSP26639 723 aaKnown RBP9.75□□□□□ -0.85
CUX1-216ENST00000558469 CD68P34810 354 aaPredicted RBP9.75□□□□□ -0.85
CUX1-216ENST00000558469 RPL22P35268 128 aaKnown RBP9.75□□□□□ -0.85
CUX1-216ENST00000558469 IL12RB1P42701 662 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 RGRP47804 291 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 VPS41P49754 854 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 SCNN1BP51168 640 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 SNRPD1P62314 119 aaKnown RBP9.75□□□□□ -0.85
CUX1-216ENST00000558469 MRPS21P82921 87 aaKnown RBP9.75□□□□□ -0.85
CUX1-216ENST00000558469 DSC2Q02487 901 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 NSUN2Q08J23 767 aaKnown RBP eCLIP9.75□□□□□ -0.85
CUX1-216ENST00000558469 LRRC32Q14392 662 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 ARSIQ5FYB1 569 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 ITPRIPL1Q6GPH6 555 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 SDE2Q6IQ49 451 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 C8orf74Q6P047 294 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 Q6ZVU0 165 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 TRMT11Q7Z4G4 463 aaKnown RBP9.75□□□□□ -0.85
CUX1-216ENST00000558469 MAATS1Q7Z4T9 603 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 JAMLQ86YT9 394 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 RYBPQ8N488 228 aaPredicted RBP9.75□□□□□ -0.85
CUX1-216ENST00000558469 PCDH20Q8N6Y1 951 aaKnown RBP9.75□□□□□ -0.85
CUX1-216ENST00000558469 IL17RCQ8NAC3 791 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 RPLP0P6Q8NHW5 317 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 KCNV2Q8TDN2 545 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 FRS2Q8WU20 508 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 EDAQ92838 391 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 PTPRN2Q92932 1015 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 ERLEC1Q96DZ1 483 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 NELL2Q99435 816 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 SEMA3CQ99985 751 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 MGME1Q9BQP7 344 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 TRIM51Q9BSJ1 452 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 LRRC1Q9BTT6 524 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 POLR1EQ9GZS1 481 aaKnown RBP9.75□□□□□ -0.85
CUX1-216ENST00000558469 MFSD1Q9H3U5 465 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 LMAN1LQ9HAT1 526 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 GLOD4Q9HC38 313 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 PCDH9Q9HC56 1237 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 LTB4R2Q9NPC1 389 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 SUN2Q9UH99 717 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 RSPH14Q9UHP6 348 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 NEU2Q9Y3R4 380 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 STON1Q9Y6Q2 735 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 NCOR1O75376 2440 aa9.75□□□□□ -0.85
CUX1-216ENST00000558469 MYLKQ15746 1914 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 INSIG1O15503 277 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 DCXO43602 365 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 SLU7O95391 586 aaKnown RBP9.74□□□□□ -0.85
CUX1-216ENST00000558469 METTL18O95568 372 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 IGSF6O95976 241 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 GSRP00390 522 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 PSMB4P28070 264 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 NTSR1P30989 418 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 HSPA9P38646 679 aaKnown RBP9.74□□□□□ -0.85
CUX1-216ENST00000558469 RECQLP46063 649 aaPredicted RBP9.74□□□□□ -0.85
CUX1-216ENST00000558469 TERF1P54274 439 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 SIGLEC14Q08ET2 396 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 NIPAL4Q0D2K0 466 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 GPS1Q13098 491 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 FZD5Q13467 585 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 PTK6Q13882 451 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 PARP6Q2NL67 630 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 MYLK3Q32MK0 819 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 HNRNPA1L2Q32P51 320 aaKnown RBP9.74□□□□□ -0.85
CUX1-216ENST00000558469 CARD16Q5EG05 197 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 FAXCQ5TGI0 409 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 C4orf22Q6V702 233 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 SYDE1Q6ZW31 735 aaPredicted RBP9.74□□□□□ -0.85
CUX1-216ENST00000558469 SRLQ86TD4 932 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 ZNF687Q8N1G0 1237 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 TXNDC5Q8NBS9 432 aaKnown RBP9.74□□□□□ -0.85
CUX1-216ENST00000558469 OR2AP1Q8NGE2 309 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 OR2A12Q8NGT7 310 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 OR6K2Q8NGY2 324 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 SPATA22Q8NHS9 363 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 GDAP1L1Q96MZ0 367 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 NUDCD1Q96RS6 583 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 RBM15Q96T37 977 aaKnown RBP eCLIP9.74□□□□□ -0.85
CUX1-216ENST00000558469 HINFPQ9BQA5 517 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 SLC25A51Q9H1U9 297 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 GBA3Q9H227 469 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 NOD2Q9HC29 1040 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 UBP1Q9NZI7 540 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 PAK5Q9P286 719 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 HECAQ9UBI9 543 aaPredicted RBP9.74□□□□□ -0.85
CUX1-216ENST00000558469 ASIC3Q9UHC3 531 aa9.74□□□□□ -0.85
CUX1-216ENST00000558469 EVLQ9UI08 416 aaPredicted RBP9.74□□□□□ -0.85
CUX1-216ENST00000558469 TECTAO75443 2155 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 TARSL2A2RTX5 802 aaKnown RBP9.73□□□□□ -0.85
CUX1-216ENST00000558469 FAM187AA6NFU0 413 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 SYNCRIPO60506 623 aaKnown RBP9.73□□□□□ -0.85
CUX1-216ENST00000558469 ADAM23O75077 832 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 SIN3BO75182 1162 aa9.73□□□□□ -0.85
CUX1-216ENST00000558469 POP4O95707 220 aaKnown RBP9.73□□□□□ -0.85
CUX1-216ENST00000558469 MT-CYBP00156 380 aaPredicted RBP9.73□□□□□ -0.85
CUX1-216ENST00000558469 MMP2P08253 660 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms