RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TMEM233	B4DJY2	109 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TAF4	O00268	1085 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	HBP1	O60381	514 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	LRCH4	O75427	683 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	GRIA1	P42261	906 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CXCR3	P49682	368 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC7A2	P52569	658 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PTRHD1	Q6GMV3	140 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	OGFOD2	Q6N063	350 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TIGD7	Q6NT04	549 aa	Predicted RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TTC30A	Q86WT1	665 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	C12orf56	Q8IXR9	622 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PGAM4	Q8N0Y7	254 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PHTF2	Q8N3S3	785 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	NAT16	Q8N8M0	369 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CHST13	Q8NET6	341 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PLEKHO2	Q8TD55	490 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	FNIP1	Q8TF40	1166 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CLEC4C	Q8WTT0	213 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	UTP4	Q969X6	686 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	LRRC39	Q96DD0	335 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	MAGED4	Q96JG8	741 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	HGH1	Q9BTY7	390 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	OXCT2	Q9BYC2	517 aa	Predicted RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ERAP1	Q9NZ08	941 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	IPP	Q9Y573	584 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CASTOR2	A6NHX0	329 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005		E7ENX8	843 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005		H0Y858	1186 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TOR1B	O14657	336 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	BUD23	O43709	281 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ATG7	O95352	703 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CST1	P01037	141 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CYP2C8	P10632	490 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	MTHFD1	P11586	935 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CD86	P42081	329 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	NAGLU	P54802	743 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CNTN2	Q02246	1040 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC25A11	Q02978	314 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	GALNT3	Q14435	633 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	AARS2	Q5JTZ9	985 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	FRMD7	Q6ZUT3	714 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	SH3BP5L	Q7L8J4	393 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TREML1	Q86YW5	311 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZDHHC17	Q8IUH5	632 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	P3H2	Q8IVL5	708 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	FBXO39	Q8N4B4	442 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PTGR2	Q8N8N7	351 aa	Predicted RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	DRAXIN	Q8NBI3	349 aa	Predicted RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZFAND2B	Q8WV99	257 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	FAR1	Q8WVX9	515 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	DDX1	Q92499	740 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	MOCOS	Q96EN8	888 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF670	Q9BS34	389 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ARMC7	Q9H6L4	198 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	HMG20A	Q9NP66	347 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	VTA1	Q9NP79	307 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNRF3	Q9ULT6	936 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	DUSP12	Q9UNI6	340 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	POLR3H	Q9Y535	204 aa	Predicted RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PHLPP1	O60346	1717 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ATP6AP2	A0A1C7CYW4	349 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	BTN3A1	O00481	513 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ATP6AP2	O75787	350 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	MFN2	O95140	757 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	YBX3	P16989	372 aa	Known RBP eCLIP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TPSB2	P20231	275 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ADSL	P30566	484 aa	Predicted RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	THOP1	P52888	689 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	POU5F1	Q01860	360 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	LRRC74A	Q0VAA2	488 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PWP1	Q13610	501 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PCLAF	Q15004	111 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TLR1	Q15399	786 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TPSAB1	Q15661	275 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ARMCX4	Q5H9R4	360 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PCID2	Q5JVF3	399 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	EFL1	Q7Z2Z2	1120 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	KBTBD2	Q8IY47	623 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CLIP4	Q8N3C7	705 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	CBR4	Q8N4T8	237 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	SVOP	Q8N4V2	548 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PLD5	Q8N7P1	536 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PHF21A	Q96BD5	680 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	PPP1R2P1	Q96PQ5	205 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	OR52B2	Q96RD2	323 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	DDX43	Q9NXZ2	648 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	EBF1	Q9UH73	591 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	ZNF541	Q9H0D2	1346 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	LOC100506127	A0A0U1RQW1	187 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	BCLAF3	A2AJT9	711 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	MTSS1	O43312	755 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	TOMM70	O94826	608 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	STAU1	O95793	577 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	DLD	P09622	509 aa	Known RBP	5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	SPATA31D3	P0C874	917 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	FBXO48	Q5FWF7	155 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	C10orf120	Q5SQS8	335 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	SLC39A4	Q6P5W5	647 aa		5.03	□□□□□ -1.6
SYNE2-223	ENST00000557005	SPATA31D4	Q6ZUB0	917 aa		5.03	□□□□□ -1.6

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