RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 DPP6P42658 865 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 RGRP47804 291 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 HCAR3P49019 387 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 CCR5P51681 352 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 ARSEP51690 589 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 NDST2P52849 883 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 CDH6P55285 790 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 RHOAP61586 193 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 KIF19Q2TAC6 998 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 PPM1JQ5JR12 505 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 PRAMEF14Q5SWL7 426 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 SEL1L3Q68CR1 1132 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 ERN2Q76MJ5 926 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 PARS2Q7L3T8 475 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 OR2AP1Q8NGE2 309 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 LRRN4Q8WUT4 740 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 TEKT4Q8WW24 435 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 TSC1Q92574 1164 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 CCDC114Q96M63 670 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 NSMCE3Q96MG7 304 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 MYOCQ99972 504 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 CAAP1Q9H8G2 361 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 UVRAGQ9P2Y5 699 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 SUSD2Q9UGT4 822 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 GGT7Q9UJ14 662 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 ZFR2Q9UPR6 939 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 ITM2BQ9Y287 266 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 FNDC3AQ9Y2H6 1198 aaKnown RBP11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 HYOU1Q9Y4L1 999 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 SNX11Q9Y5W9 270 aa11.77□□□□□ -0.53
CCDC88C-208ENST00000554165 A0A1W2PQU0 124 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 TTC24A2A3L6 582 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 EIF3CLB5ME19 914 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 MUSKO15146 869 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 SLC7A4O43246 635 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 SPINT1O43278 529 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 RNGTTO60942 597 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 GSRP00390 522 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 CD59P13987 128 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 ABL2P42684 1182 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 AFF3P51826 1226 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 ATXN3P54252 364 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 SFSWAPQ12872 951 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 HLA-BQ31612 363 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 FAM182AQ5T1J6 154 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 KDM7AQ6ZMT4 941 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 RABEPKQ7Z6M1 372 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 TSEN2Q8NCE0 465 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 RAPGEF5Q92565 580 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 MRFAP1L1Q96HT8 127 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 SERAC1Q96JX3 654 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 KLHL32Q96NJ5 620 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 CAMK1GQ96NX5 476 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 EIF3CQ99613 913 aaKnown RBP11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 NCAPGQ9BPX3 1015 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 AASDHPPTQ9NRN7 309 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 UBA2Q9UBT2 640 aaPredicted RBP11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 ANKRD6Q9Y2G4 727 aa11.76□□□□□ -0.53
CCDC88C-208ENST00000554165 A0A1W2PR77 199 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 ZSCAN5CA6NGD5 496 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 ARHGAP42A6NI28 874 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 C16orf96A6NNT2 1141 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 SLC31A1O15431 190 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 LATO43561 262 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 BUB1BO60566 1050 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 KCNK5O95279 499 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 MAP3K6O95382 1288 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 PIGNO95427 931 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 POP4O95707 220 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 SYPP08247 313 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 ADRB3P13945 408 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 ITGB7P26010 798 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 ARL4AP40617 200 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 NEK3P51956 506 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 GEMIN4P57678 1058 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 SNRPD1P62314 119 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 FAM193AP78312 1265 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 DPYSL3Q14195 570 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 FGL2Q14314 439 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 KRT81Q14533 505 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 ZNF284Q2VY69 593 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 INO80DQ53TQ3 878 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 ZNF805Q5CZA5 627 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 PSAPL1Q6NUJ1 521 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 TMCO3Q6UWJ1 677 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 PLPP6Q8IY26 295 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 DEFB124Q8NES8 71 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 PCDH19Q8TAB3 1148 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 GDAP1L1Q96MZ0 367 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 HDAC8Q9BY41 377 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 GOLPH3Q9H4A6 298 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 GAREM1Q9H706 876 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 FZD3Q9NPG1 666 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 DYRK4Q9NR20 520 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 IPO11Q9UI26 975 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 FADS3Q9Y5Q0 445 aa11.75□□□□□ -0.53
CCDC88C-208ENST00000554165 TMEM131Q92545 1883 aa11.74□□□□□ -0.53
CCDC88C-208ENST00000554165 TRPM6Q9BX84 2022 aa11.74□□□□□ -0.53
CCDC88C-208ENST00000554165 TPRP12270 2363 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-208ENST00000554165 CXorf51AA0A1B0GTR3 108 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms