RNA–Protein interactions for RNA: ENST00000553256.5

PTCH1-227, Transcript of patched 1, humanhuman

TSL 4

Gene PTCH1, Length 537 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-227ENST00000553256 SNX19Q92543 992 aa19.59■□□□□ 0.73
PTCH1-227ENST00000553256 NSMCE3Q96MG7 304 aa19.59■□□□□ 0.73
PTCH1-227ENST00000553256 GTPBP2Q9BX10 602 aaKnown RBP19.59■□□□□ 0.73
PTCH1-227ENST00000553256 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.59■□□□□ 0.73
PTCH1-227ENST00000553256 SPTLC3Q9NUV7 552 aa19.59■□□□□ 0.73
PTCH1-227ENST00000553256 HPCAL4Q9UM19 191 aa19.59■□□□□ 0.73
PTCH1-227ENST00000553256 ANKRD6Q9Y2G4 727 aa19.59■□□□□ 0.73
PTCH1-227ENST00000553256 FNDC3AQ9Y2H6 1198 aaKnown RBP19.59■□□□□ 0.73
PTCH1-227ENST00000553256 FARP1Q9Y4F1 1045 aaPredicted RBP19.59■□□□□ 0.73
PTCH1-227ENST00000553256 FADS3Q9Y5Q0 445 aa19.59■□□□□ 0.73
PTCH1-227ENST00000553256 SNX11Q9Y5W9 270 aa19.59■□□□□ 0.73
PTCH1-227ENST00000553256 DOCK9Q9BZ29 2069 aa19.59■□□□□ 0.73
PTCH1-227ENST00000553256 TBC1D3DA0A087WVF3 549 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 TBC1D3IA0A087WXS9 549 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 TBC1D3EA0A087X179 549 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 TBC1D3KA0A087X1G2 549 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 TBC1D3FA6NER0 549 aaPredicted RBP19.58■□□□□ 0.72
PTCH1-227ENST00000553256 TBC1D3LB9A6J9 549 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 AKR1B15C9JRZ8 316 aaPredicted RBP19.58■□□□□ 0.72
PTCH1-227ENST00000553256 MYO1FO00160 1098 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 AP1G1O43747 822 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 CD48P09326 243 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 TBC1D3HP0C7X1 549 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 FECHP22830 423 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 ABL2P42684 1182 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 TAS2R40P59535 323 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 ZNF423Q2M1K9 1284 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 ZNF284Q2VY69 593 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 HLA-BQ31612 363 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 ATP13A4Q4VNC1 1196 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 TBC1D3GQ6DHY5 549 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 TBC1D3CQ6IPX1 549 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 CNGA4Q8IV77 575 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 TBC1D3Q8IZP1 549 aaPredicted RBP19.58■□□□□ 0.72
PTCH1-227ENST00000553256 OR6K2Q8NGY2 324 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 DONSONQ9NYP3 566 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 WASF3Q9UPY6 502 aa19.58■□□□□ 0.72
PTCH1-227ENST00000553256 AREL1O15033 823 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 INSIG1O15503 277 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 OPHN1O60890 802 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 CBFA2T3O75081 653 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 LCA5LO95447 670 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 POP4O95707 220 aaKnown RBP19.57■□□□□ 0.72
PTCH1-227ENST00000553256 CEACAM1P13688 526 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 ADRB3P13945 408 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 AMPD1P23109 780 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 RECQLP46063 649 aaPredicted RBP19.57■□□□□ 0.72
PTCH1-227ENST00000553256 RGRP47804 291 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 SNRPD1P62314 119 aaKnown RBP19.57■□□□□ 0.72
PTCH1-227ENST00000553256 FGL2Q14314 439 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 SHBQ15464 509 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 UAP1L1Q3KQV9 507 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 N4BP2L1Q5TBK1 243 aaPredicted RBP19.57■□□□□ 0.72
PTCH1-227ENST00000553256 MRFAP1L1Q96HT8 127 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 TRIM5Q9C035 493 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 ZWILCHQ9H900 591 aa19.57■□□□□ 0.72
PTCH1-227ENST00000553256 RCOR3Q9P2K3 495 aaPredicted RBP19.57■□□□□ 0.72
PTCH1-227ENST00000553256 TSPAN11A1L157 253 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 MUSKO15146 869 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 MAN1A1P33908 653 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 NUDT1P36639 197 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 DNA2P51530 1060 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 ZNF75DP51815 510 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 NEK3P51956 506 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 ZNF805Q5CZA5 627 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 NAPEPLDQ6IQ20 393 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 PSAPL1Q6NUJ1 521 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 IL27RAQ6UWB1 636 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 HORMAD1Q86X24 394 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 LZTR1Q8N653 840 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 BAHD1Q8TBE0 780 aaPredicted RBP19.56■□□□□ 0.72
PTCH1-227ENST00000553256 CTNNBL1Q8WYA6 563 aaPredicted RBP19.56■□□□□ 0.72
PTCH1-227ENST00000553256 HSPH1Q92598 858 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 FAF2Q96CS3 445 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 CPEB1Q9BZB8 566 aaKnown RBP19.56■□□□□ 0.72
PTCH1-227ENST00000553256 ZDHHC6Q9H6R6 413 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 GAREM1Q9H706 876 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 ZNHIT6Q9NWK9 470 aaKnown RBP19.56■□□□□ 0.72
PTCH1-227ENST00000553256 CTTNBP2NLQ9P2B4 639 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 UBA2Q9UBT2 640 aaPredicted RBP19.56■□□□□ 0.72
PTCH1-227ENST00000553256 DMTF1Q9Y222 760 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 PCDHGB2Q9Y5G2 931 aa19.56■□□□□ 0.72
PTCH1-227ENST00000553256 A0A1W2PQU0 124 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 ARHGAP42A6NI28 874 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 C16orf96A6NNT2 1141 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 H0Y8X5 98 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 H3BRJ5 948 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 AKR1B10O60218 316 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 BUB1BO60566 1050 aaPredicted RBP19.55■□□□□ 0.72
PTCH1-227ENST00000553256 RNGTTO60942 597 aaKnown RBP19.55■□□□□ 0.72
PTCH1-227ENST00000553256 CD38P28907 300 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 PMLP29590 882 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 CSNK1DP48730 415 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 NOVA1P51513 510 aaKnown RBP19.55■□□□□ 0.72
PTCH1-227ENST00000553256 ATXN3P54252 364 aaPredicted RBP19.55■□□□□ 0.72
PTCH1-227ENST00000553256 FAM193AP78312 1265 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 IL10RBQ08334 325 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 DPYSL3Q14195 570 aa19.55■□□□□ 0.72
PTCH1-227ENST00000553256 SPATS2Q86XZ4 545 aaKnown RBP19.55■□□□□ 0.72
PTCH1-227ENST00000553256 DEFB124Q8NES8 71 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms