RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 SMAPO00193 183 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 PPP6CO00743 305 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 PEX11AO75192 247 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 SUPT7LO94864 414 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 SERPINE1P05121 402 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 ZCCHC18P0CG32 403 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 CCDC166P0CW27 439 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 CTPS1P17812 591 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 SLC11A1P49279 550 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 ABCE1P61221 599 aaKnown RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 NIPAL4Q0D2K0 466 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 POLD3Q15054 466 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 XKR4Q5GH76 650 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 LRRC73Q5JTD7 316 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 CLEC6AQ6EIG7 209 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 TPGS1Q6ZTW0 290 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 SLC24A5Q71RS6 500 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 BHLHA9Q7RTU4 235 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 TMC7Q7Z402 723 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 HPS6Q86YV9 775 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 ARHGAP12Q8IWW6 846 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 DCP1BQ8IZD4 617 aaKnown RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 FSTL5Q8N475 847 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 PCSK9Q8NBP7 692 aaKnown RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 LRRC39Q96DD0 335 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 RTP4Q96DX8 246 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 RBBP8Q99708 897 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 TRIM8Q9BZR9 551 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 GPAMQ9HCL2 828 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 DCDC2Q9UHG0 476 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 FBXO5Q9UKT4 447 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 ACOT9Q9Y305 439 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 PTGDR2Q9Y5Y4 395 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 DOCK6Q96HP0 2047 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 PLXNA1Q9UIW2 1896 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 AXIN1O15169 862 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 SNAP91O60641 907 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 MAFKO60675 156 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 TRIM13O60858 407 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 RAMP2O60895 175 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 GPC4O75487 556 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 SIX3O95343 332 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 ACRP10323 421 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 WEE1P30291 646 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 ABL2P42684 1182 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 PTDSS1P48651 473 aaKnown RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 SERPINB8P50452 374 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 NUDT2P50583 147 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 COG7P83436 770 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 OCRLQ01968 901 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 TWF1Q12792 350 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 FOXD4Q12950 439 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 DEFB115Q30KQ5 88 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 PITRM1Q5JRX3 1037 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 SPANXN3Q5MJ09 141 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 GPR158Q5T848 1215 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 C6orf163Q5TEZ5 329 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 ASRGL1Q7L266 308 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 TAS2R42Q7RTR8 314 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 SNX32Q86XE0 403 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 TRIM42Q8IWZ5 723 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 SUGP1Q8IWZ8 645 aaKnown RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 WBP2Q969T9 261 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 DNAJC1Q96KC8 554 aaKnown RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 CPNE1Q99829 537 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 MARCH4Q9P2E8 410 aaPredicted RBP5.66□□□□□ -1.5
LIMA1-215ENST00000552823 IGSF9Q9P2J2 1179 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 ZDHHC2Q9UIJ5 367 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 ATP11BQ9Y2G3 1177 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 V9GYQ6 96 aa5.66□□□□□ -1.5
LIMA1-215ENST00000552823 PLXNB2O15031 1838 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 KCNU1A8MYU2 1149 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 SIN3BO75182 1162 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 DHRS4L1P0CG22 281 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 STMN1P16949 149 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 KCNA5P22460 613 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 CCND1P24385 295 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 FMO4P31512 558 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 CDKN1CP49918 316 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-215ENST00000552823 IDH3AP50213 366 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 MLLT6P55198 1093 aaPredicted RBP5.65□□□□□ -1.5
LIMA1-215ENST00000552823 ECT2LQ008S8 904 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 GALNT2Q10471 571 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 POM121L1PQ3SYA9 428 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 MS4A13Q5J8X5 152 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 RABGAP1LQ5R372 815 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 SH2D4BQ5SQS7 431 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 GRTP1Q5TC63 336 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 MBLAC2Q68D91 279 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 PKN3Q6P5Z2 889 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 MARK2Q7KZI7 788 aaKnown RBP5.65□□□□□ -1.5
LIMA1-215ENST00000552823 MAVSQ7Z434 540 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 SCUBE1Q8IWY4 988 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 CARNMT1Q8N4J0 409 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 LPCAT1Q8NF37 534 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 HEXDCQ8WVB3 486 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 HDAC11Q96DB2 347 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 SUSD3Q96L08 255 aa5.65□□□□□ -1.5
LIMA1-215ENST00000552823 LENG8Q96PV6 779 aaPredicted RBP5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms