RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 ASCC3Q8N3C0 2202 aaKnown RBP12.06□□□□□ -0.48
YBX3-217ENST00000546164 UPK3BL1B0FP48 263 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 UPK3BL2E5RIL1 263 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 GJB3O75712 270 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 IL4RP24394 825 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 ARHGAP25P42331 645 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 MAPK8P45983 427 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 NEK3P51956 506 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 ATXN3P54252 364 aaPredicted RBP12.06□□□□□ -0.48
YBX3-217ENST00000546164 RACK1P63244 317 aaKnown RBP12.06□□□□□ -0.48
YBX3-217ENST00000546164 FOXK2Q01167 660 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 MYLK3Q32MK0 819 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 POM121L1PQ3SYA9 428 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 IL27RAQ6UWB1 636 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 LEKR1Q6ZMV7 388 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 CCDC170Q8IYT3 715 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 MINDY1Q8N5J2 469 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 SLC35G2Q8TBE7 412 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 CELF6Q96J87 481 aaKnown RBP12.06□□□□□ -0.48
YBX3-217ENST00000546164 PANX2Q96RD6 677 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 EBF2Q9HAK2 575 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 FSCN3Q9NQT6 498 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 LHX3Q9UBR4 397 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 UBA2Q9UBT2 640 aaPredicted RBP12.06□□□□□ -0.48
YBX3-217ENST00000546164 DMTF1Q9Y222 760 aa12.06□□□□□ -0.48
YBX3-217ENST00000546164 TBC1D3DA0A087WVF3 549 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TBC1D3IA0A087WXS9 549 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TBC1D3EA0A087X179 549 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TBC1D3KA0A087X1G2 549 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 DCDC2BA2VCK2 349 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TBC1D3FA6NER0 549 aaPredicted RBP12.05□□□□□ -0.48
YBX3-217ENST00000546164 TBC1D3LB9A6J9 549 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 J3KR12 359 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 AP1G1O43747 822 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 IGSF6O95976 241 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 KRT7P08729 469 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TBC1D3HP0C7X1 549 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 AMPD1P23109 780 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 SERPINB6P35237 376 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 HADHBP55084 474 aaKnown RBP12.05□□□□□ -0.48
YBX3-217ENST00000546164 CDH6P55285 790 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TAS2R40P59535 323 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 RHOAP61586 193 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 PPP2CBP62714 309 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 PPP2CAP67775 309 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 BNC1Q01954 994 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 IL10RBQ08334 325 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 SLC14A1Q13336 389 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 RFTN1Q14699 578 aaPredicted RBP12.05□□□□□ -0.48
YBX3-217ENST00000546164 PDK2Q15119 407 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 CYTH1Q15438 398 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TEAD4Q15561 434 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 ZNF805Q5CZA5 627 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TBC1D3GQ6DHY5 549 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TBC1D3CQ6IPX1 549 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TMCO3Q6UWJ1 677 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 PRPF39Q86UA1 669 aaKnown RBP12.05□□□□□ -0.48
YBX3-217ENST00000546164 ZSCAN30Q86W11 494 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 CPNE8Q86YQ8 564 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 TBC1D3Q8IZP1 549 aaPredicted RBP12.05□□□□□ -0.48
YBX3-217ENST00000546164 RYBPQ8N488 228 aaPredicted RBP12.05□□□□□ -0.48
YBX3-217ENST00000546164 RAB7BQ96AH8 199 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 ZNF599Q96NL3 588 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 ZNF670Q9BS34 389 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 ANP32EQ9BTT0 268 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 GTPBP2Q9BX10 602 aaKnown RBP12.05□□□□□ -0.48
YBX3-217ENST00000546164 CPEB1Q9BZB8 566 aaKnown RBP12.05□□□□□ -0.48
YBX3-217ENST00000546164 ZDHHC6Q9H6R6 413 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 ETNK2Q9NVF9 386 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 IPO11Q9UI26 975 aaKnown RBP12.05□□□□□ -0.48
YBX3-217ENST00000546164 CABIN1Q9Y6J0 2220 aa12.05□□□□□ -0.48
YBX3-217ENST00000546164 A0A1B0GVT2 93 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 C16orf96A6NNT2 1141 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 DFFAO00273 331 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 KRIT1O00522 736 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 VILLO15195 856 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 OPHN1O60890 802 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 CD48P09326 243 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 ZNF883P0CG24 379 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 ADRB3P13945 408 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 CSRP1P21291 193 aaKnown RBP12.04□□□□□ -0.48
YBX3-217ENST00000546164 GKP32189 559 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 SLC1A1P43005 524 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 SSR1P43307 286 aaKnown RBP12.04□□□□□ -0.48
YBX3-217ENST00000546164 CSNK1DP48730 415 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 CSNK1EP49674 416 aaKnown RBP12.04□□□□□ -0.48
YBX3-217ENST00000546164 RAD51Q06609 339 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 DPYSL3Q14195 570 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 KRT81Q14533 505 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 GRM3Q14832 879 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 ATXN7L2Q5T6C5 722 aaPredicted RBP12.04□□□□□ -0.48
YBX3-217ENST00000546164 TMCO4Q5TGY1 634 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 LRRC38Q5VT99 294 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 NAPEPLDQ6IQ20 393 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 PARS2Q7L3T8 475 aaKnown RBP12.04□□□□□ -0.48
YBX3-217ENST00000546164 HORMAD1Q86X24 394 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 LRRC49Q8IUZ0 686 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 MAP7D3Q8IWC1 876 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 OR6K2Q8NGY2 324 aa12.04□□□□□ -0.48
YBX3-217ENST00000546164 FAF2Q96CS3 445 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms