RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 SYT12Q8IV01 421 aa12.66□□□□□ -0.38
COL4A6-209ENST00000545689 MED8Q96G25 268 aa12.66□□□□□ -0.38
COL4A6-209ENST00000545689 ADAM2Q99965 735 aa12.66□□□□□ -0.38
COL4A6-209ENST00000545689 CCDC28BQ9BUN5 200 aa12.66□□□□□ -0.38
COL4A6-209ENST00000545689 LMO7Q8WWI1 1683 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 PMM2O15305 246 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 TSPAN3O60637 253 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 POU1F1P28069 291 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 GRK4P32298 578 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SCNN1GP51170 649 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 NAGLUP54802 743 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 ZC3H12AQ5D1E8 599 aaKnown RBP12.65□□□□□ -0.38
COL4A6-209ENST00000545689 NECAB2Q7Z6G3 386 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 TDRPQ86YL5 185 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 CLVS1Q8IUQ0 354 aaPredicted RBP12.65□□□□□ -0.38
COL4A6-209ENST00000545689 PYDC1Q8WXC3 89 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SEMA4DQ92854 862 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 C1orf50Q9BV19 199 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SH3BP4Q9P0V3 963 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SNAP91O60641 907 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 MSCO60682 206 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 CALCAP01258 141 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 FGF1P05230 155 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 BPGMP07738 259 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 ITGA1P56199 1179 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 TIMM50Q3ZCQ8 353 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 CYP2R1Q6VVX0 501 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 XYLT1Q86Y38 959 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SYTL1Q8IYJ3 562 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 PHACTR4Q8IZ21 702 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SLC4A11Q8NBS3 891 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 RHBDL2Q9NX52 303 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 WTIPA6NIX2 430 aaPredicted RBP12.65□□□□□ -0.38
COL4A6-209ENST00000545689 XYLBO75191 536 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SLC16A1P53985 500 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 KCNJ2P63252 427 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 ARHGAP17Q68EM7 881 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 DCLRE1AQ6PJP8 1040 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.65□□□□□ -0.38
COL4A6-209ENST00000545689 CIPCQ9C0C6 399 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 DNAJC5Q9H3Z4 198 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 ICAM3P32942 547 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SMARCB1Q12824 385 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 MED1Q15648 1581 aaPredicted RBP12.65□□□□□ -0.38
COL4A6-209ENST00000545689 OTUD3Q5T2D3 398 aaPredicted RBP12.65□□□□□ -0.38
COL4A6-209ENST00000545689 HECTD3Q5T447 861 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SLC44A2Q8IWA5 706 aaPredicted RBP12.65□□□□□ -0.38
COL4A6-209ENST00000545689 C7orf26Q96N11 449 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 ATXN3LQ9H3M9 355 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 DNAJC28Q9NX36 388 aa12.65□□□□□ -0.38
COL4A6-209ENST00000545689 SF3B1O75533 1304 aaKnown RBP eCLIP12.65□□□□□ -0.39
COL4A6-209ENST00000545689 SMIM35A0A1B0GVV1 85 aa12.65□□□□□ -0.39
COL4A6-209ENST00000545689 SERPINI2O75830 405 aa12.65□□□□□ -0.39
COL4A6-209ENST00000545689 CATP04040 527 aaKnown RBP12.65□□□□□ -0.39
COL4A6-209ENST00000545689 ACSM2AQ08AH3 577 aa12.65□□□□□ -0.39
COL4A6-209ENST00000545689 PFKFB4Q16877 469 aa12.65□□□□□ -0.39
COL4A6-209ENST00000545689 INO80DQ53TQ3 878 aaPredicted RBP12.65□□□□□ -0.39
COL4A6-209ENST00000545689 ACSM2BQ68CK6 577 aa12.65□□□□□ -0.39
COL4A6-209ENST00000545689 ZNF549Q6P9A3 640 aa12.65□□□□□ -0.39
COL4A6-209ENST00000545689 ADAMTSL2Q86TH1 951 aa12.65□□□□□ -0.39
COL4A6-209ENST00000545689 MLPHQ9BV36 600 aaPredicted RBP12.65□□□□□ -0.39
COL4A6-209ENST00000545689 NLNQ9BYT8 704 aa12.65□□□□□ -0.39
COL4A6-209ENST00000545689 REEP1Q9H902 201 aa12.65□□□□□ -0.39
COL4A6-209ENST00000545689 SEMA4BQ9NPR2 832 aaPredicted RBP12.65□□□□□ -0.39
COL4A6-209ENST00000545689 CRYL1Q9Y2S2 319 aa12.65□□□□□ -0.39
COL4A6-209ENST00000545689 IGKV6D-41A0A0C4DH26 115 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 CILPO75339 1184 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 NR1H2P55055 460 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 RPS7P62081 194 aaKnown RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 SLC25A3Q00325 362 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 TRMT11Q7Z4G4 463 aaKnown RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 MTERF3Q96E29 417 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 ARL15Q9NXU5 204 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 PKNOX1P55347 436 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 BOP1Q14137 746 aaKnown RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 DRICH1Q6PGQ1 229 aaPredicted RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 ZNF605Q86T29 641 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 FBXW8Q8N3Y1 598 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 OSBPL11Q9BXB4 747 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 OSBPL6Q9BZF3 934 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 LRRC4CQ9HCJ2 640 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 ERVK-5Q9HDB9 667 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 FBXO6Q9NRD1 293 aaPredicted RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 SFMBT1Q9UHJ3 866 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 PRDM4Q9UKN5 801 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 FAM208AQ9UK61 1670 aaKnown RBP12.64□□□□□ -0.39
COL4A6-209ENST00000545689 IDO1P14902 403 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 ITGB6P18564 788 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 BLVRAP53004 296 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 C9orf57Q5W0N0 161 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 PROSER1Q86XN7 944 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 C19orf18Q8NEA5 215 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 IRGQQ8WZA9 623 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 RHOJQ9H4E5 214 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 FETUBQ9UGM5 382 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 SGTAO43765 313 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 ERCC2P18074 760 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 TFEBP19484 476 aa12.64□□□□□ -0.39
COL4A6-209ENST00000545689 SNRPD1P62314 119 aaKnown RBP12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms