RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 ABCE1P61221 599 aaKnown RBP16.53■□□□□ 0.24
COL4A1-204ENST00000543140 THOC5Q13769 683 aaKnown RBP16.53■□□□□ 0.24
COL4A1-204ENST00000543140 UBAP2LQ14157 1087 aaKnown RBP16.53■□□□□ 0.24
COL4A1-204ENST00000543140 KRT72Q14CN4 511 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 POLD3Q15054 466 aaPredicted RBP16.53■□□□□ 0.24
COL4A1-204ENST00000543140 VWA5B1Q5TIE3 1220 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 ZNF470Q6ECI4 717 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 NADSYN1Q6IA69 706 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 MFSD6LQ8IWD5 586 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 DDX51Q8N8A6 666 aaKnown RBP eCLIP16.53■□□□□ 0.24
COL4A1-204ENST00000543140 AGR3Q8TD06 166 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 MAGEC3Q8TD91 643 aa16.53■□□□□ 0.24
COL4A1-204ENST00000543140 RAMP2O60895 175 aa16.52■□□□□ 0.24
COL4A1-204ENST00000543140 GNRH1P01148 92 aa16.52■□□□□ 0.24
COL4A1-204ENST00000543140 GTF2A1P52655 376 aaPredicted RBP16.52■□□□□ 0.24
COL4A1-204ENST00000543140 RFWD3Q6PCD5 774 aa16.52■□□□□ 0.24
COL4A1-204ENST00000543140 ANKS3Q6ZW76 656 aa16.52■□□□□ 0.24
COL4A1-204ENST00000543140 MAVSQ7Z434 540 aa16.52■□□□□ 0.24
COL4A1-204ENST00000543140 SPATA17Q96L03 361 aa16.52■□□□□ 0.24
COL4A1-204ENST00000543140 TUBB6Q9BUF5 446 aa16.52■□□□□ 0.24
COL4A1-204ENST00000543140 PPP1R12CQ9BZL4 782 aa16.52■□□□□ 0.24
COL4A1-204ENST00000543140 NSMCE4AQ9NXX6 385 aa16.52■□□□□ 0.24
COL4A1-204ENST00000543140 SLC38A8A6NNN8 435 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 CAPN14A8MX76 684 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 AURKAO14965 403 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 HNRNPCL1O60812 293 aaKnown RBP16.52■□□□□ 0.23
COL4A1-204ENST00000543140 MMP2P08253 660 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 SLC35E2BP0CK96 405 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 KDSRQ06136 332 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 CEP97Q8IW35 865 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 CRIPAKQ8N1N5 446 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 PGBD5Q8N414 524 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 FBXO22Q8NEZ5 403 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 FBXO27Q8NI29 283 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 KCTD4Q8WVF5 259 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 SCYL1Q96KG9 808 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 PPP1R2P1Q96PQ5 205 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 TREX1Q9NSU2 369 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 TAS2R1Q9NYW7 299 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 FNIP2Q9P278 1114 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 ZNF212Q9UDV6 495 aa16.52■□□□□ 0.23
COL4A1-204ENST00000543140 RUVBL2Q9Y230 463 aaKnown RBP16.52■□□□□ 0.23
COL4A1-204ENST00000543140 H7C4K7 107 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 CCL22O00626 93 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 IGLV3-27P01718 113 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 GM2AP17900 193 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 ELAVL2Q12926 359 aaKnown RBP16.51■□□□□ 0.23
COL4A1-204ENST00000543140 USP4Q13107 963 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 GPATCH11Q8N954 259 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 DEFB118Q96PH6 123 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 TLE6Q9H808 572 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 FAM95CA0A1B0GW59 222 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 PRR5-ARHGAP8B1AHC4 643 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 PITPNM1O00562 1244 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 GSC2O15499 205 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 FKTNO75072 461 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 OR1D2P34982 312 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 SERPINH1P50454 418 aaKnown RBP16.51■□□□□ 0.23
COL4A1-204ENST00000543140 ARHGAP8P85298 464 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 CNTN4Q8IWV2 1026 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 LGI2Q8N0V4 545 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 NSMCE1Q8WV22 266 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 C1QTNF1Q9BXJ1 281 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 ACE2Q9BYF1 805 aaPredicted RBP16.51■□□□□ 0.23
COL4A1-204ENST00000543140 NACA2Q9H009 215 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 DENND2DQ9H6A0 471 aaPredicted RBP16.51■□□□□ 0.23
COL4A1-204ENST00000543140 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.51■□□□□ 0.23
COL4A1-204ENST00000543140 UXTQ9UBK9 157 aaPredicted RBP16.51■□□□□ 0.23
COL4A1-204ENST00000543140 TRIM17Q9Y577 477 aa16.51■□□□□ 0.23
COL4A1-204ENST00000543140 DRGXA6NNA5 263 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 B2RBV5 119 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 ENTPD5O75356 428 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 HSPA4LO95757 839 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 PAMP19021 973 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 TACR2P21452 398 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 HARS2P49590 506 aaKnown RBP16.5■□□□□ 0.23
COL4A1-204ENST00000543140 CDK18Q07002 472 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 UGP2Q16851 508 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 NEPROQ6NW34 567 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 ZNF781Q8N8C0 355 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 PTCD2Q8WV60 388 aaKnown RBP16.5■□□□□ 0.23
COL4A1-204ENST00000543140 ELMO2Q96JJ3 720 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 ZNF512Q96ME7 567 aaPredicted RBP16.5■□□□□ 0.23
COL4A1-204ENST00000543140 DONSONQ9NYP3 566 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 FBXO5Q9UKT4 447 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 ACTL7AQ9Y615 435 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 MKI67P46013 3256 aaKnown RBP16.5■□□□□ 0.23
COL4A1-204ENST00000543140 TRIM13O60858 407 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 SERPINA6P08185 405 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 CCND1P24385 295 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 HADHAP40939 763 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 ALDH7A1P49419 539 aaKnown RBP16.5■□□□□ 0.23
COL4A1-204ENST00000543140 HTRA3P83110 453 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 TUBB3Q13509 450 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 SERINC3Q13530 473 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 ACCSLQ4AC99 568 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 ZNF789Q5FWF6 425 aa16.5■□□□□ 0.23
COL4A1-204ENST00000543140 LIN28BQ6ZN17 250 aaKnown RBP eCLIP16.5■□□□□ 0.23
COL4A1-204ENST00000543140 CENPLQ8N0S6 344 aaPredicted RBP16.5■□□□□ 0.23
COL4A1-204ENST00000543140 TTC8Q8TAM2 541 aa16.5■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms