RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ENO4A6NNW6 628 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 AOC2O75106 756 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 TADA2AO75478 443 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 C10orf120Q5SQS8 335 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 TMCO2Q7Z6W1 182 aaPredicted RBP17.12■□□□□ 0.33
USP28-208ENST00000540438 TMEM173Q86WV6 379 aaPredicted RBP17.12■□□□□ 0.33
USP28-208ENST00000540438 HEXDCQ8WVB3 486 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 MRGPRX2Q96LB1 330 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 OLFM1Q99784 485 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 NOL6Q9H6R4 1146 aaKnown RBP17.12■□□□□ 0.33
USP28-208ENST00000540438 CCSER2Q9H7U1 834 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 SSX2IPQ9Y2D8 614 aa17.12■□□□□ 0.33
USP28-208ENST00000540438 CHD7Q9P2D1 2997 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 TM7SF2O76062 418 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 KCNQ1P51787 676 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 SCAPQ12770 1279 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 PPP1R3AQ16821 1122 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 MFSD14CQ5VZR4 134 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 RSPO2Q6UXX9 243 aaPredicted RBP17.11■□□□□ 0.33
USP28-208ENST00000540438 OR52K2Q8NGK3 314 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 TMA16Q96EY4 203 aaKnown RBP17.11■□□□□ 0.33
USP28-208ENST00000540438 ZNF333Q96JL9 665 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 SLC9A7Q96T83 725 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 NPAS2Q99743 824 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 SPON2Q9BUD6 331 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 GPR62Q9BZJ7 368 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 TCF7L2Q9NQB0 619 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 MARCH4Q9P2E8 410 aaPredicted RBP17.11■□□□□ 0.33
USP28-208ENST00000540438 CPB1P15086 417 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 ANPEPP15144 967 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 TFEBP19484 476 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 CNTFP26441 200 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 PCBP1Q15365 356 aaKnown RBP eCLIP17.11■□□□□ 0.33
USP28-208ENST00000540438 CLEC6AQ6EIG7 209 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 PKN3Q6P5Z2 889 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP17.11■□□□□ 0.33
USP28-208ENST00000540438 PHC3Q8NDX5 983 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 ANKRD49Q8WVL7 239 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 RPRD1AQ96P16 312 aaPredicted RBP17.11■□□□□ 0.33
USP28-208ENST00000540438 NAT9Q9BTE0 207 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 CDH19Q9H159 772 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 CSNK1G1Q9HCP0 422 aa17.11■□□□□ 0.33
USP28-208ENST00000540438 GMPR2Q9P2T1 348 aaKnown RBP17.11■□□□□ 0.33
USP28-208ENST00000540438 TXNDC9O14530 226 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 GPR39O43194 453 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 GLDCP23378 1020 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 VHLP40337 213 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 MGAT3Q09327 533 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 TBL3Q12788 808 aaKnown RBP17.1■□□□□ 0.33
USP28-208ENST00000540438 SH2D4BQ5SQS7 431 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 RNF220Q5VTB9 566 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 DCBLD1Q8N8Z6 715 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 TRIM8Q9BZR9 551 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 ZCWPW1Q9H0M4 648 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 FAM124BQ9H5Z6 455 aaPredicted RBP17.1■□□□□ 0.33
USP28-208ENST00000540438 SUFUQ9UMX1 484 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 ARL5AQ9Y689 179 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 A0A0D9SEW6 157 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 SLC12A8A0AV02 714 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 ITGAXP20702 1163 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 KCNC1P48547 511 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 SLC12A2P55011 1212 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 PCDH20Q8N6Y1 951 aaKnown RBP17.1■□□□□ 0.33
USP28-208ENST00000540438 TXNDC5Q8NBS9 432 aaKnown RBP17.1■□□□□ 0.33
USP28-208ENST00000540438 HDAC10Q969S8 669 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 TSNARE1Q96NA8 513 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 ACOT9Q9Y305 439 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 CCDC166P0CW27 439 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 TAF10Q12962 218 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 KLF10Q13118 480 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 ANO4Q32M45 955 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 FAM117BQ6P1L5 589 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 PRSS55Q6UWB4 352 aaPredicted RBP17.1■□□□□ 0.33
USP28-208ENST00000540438 TAS1R1Q7RTX1 841 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 TMEM151AQ8N4L1 468 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 ENDOVQ8N8Q3 282 aaKnown RBP17.1■□□□□ 0.33
USP28-208ENST00000540438 PDCD6IPQ8WUM4 868 aaKnown RBP17.1■□□□□ 0.33
USP28-208ENST00000540438 ESAMQ96AP7 390 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 RCN3Q96D15 328 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 POMKQ9H5K3 350 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 UXTQ9UBK9 157 aaPredicted RBP17.1■□□□□ 0.33
USP28-208ENST00000540438 FBXO5Q9UKT4 447 aa17.1■□□□□ 0.33
USP28-208ENST00000540438 MANSC4A6NHS7 340 aaPredicted RBP17.09■□□□□ 0.33
USP28-208ENST00000540438 WFS1O76024 890 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 COX4I1P13073 169 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 STMN1P16949 149 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 HOXC8P31273 242 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 DUSP4Q13115 394 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 CTXN3Q4LDR2 81 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 RASIP1Q5U651 963 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 ACMSDQ8TDX5 336 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 FAM193BQ96PV7 902 aaPredicted RBP17.09■□□□□ 0.33
USP28-208ENST00000540438 ILKAPQ9H0C8 392 aaPredicted RBP17.09■□□□□ 0.33
USP28-208ENST00000540438 PIDD1Q9HB75 910 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 ABCC13Q9NSE7 274 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 TRHDEQ9UKU6 1024 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 TNFRSF10BO14763 440 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 ADAMTS4O75173 837 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 IRF1P10914 325 aa17.09■□□□□ 0.33
USP28-208ENST00000540438 ASPHQ12797 758 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms