RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 LRIG2O94898 1065 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 CKMT1AP12532 417 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 UNGP13051 313 aaPredicted RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 RHOQP17081 205 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 SDC4P31431 198 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 RFC1P35251 1148 aaPredicted RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 SOX5P35711 763 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 PTPN9P43378 593 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 MAPKAPK2P49137 400 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 HDAC4P56524 1084 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 JAM2P57087 298 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 KRT31Q15323 416 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 ARL13BQ3SXY8 428 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 HS1BP3Q53T59 392 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 CT47A1Q5JQC4 288 aaPredicted RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 CDKAL1Q5VV42 579 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 CDCP2Q5VXM1 449 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 KIAA1161Q6NSJ0 714 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 WDR59Q6PJI9 974 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 KYAT3Q6YP21 454 aaKnown RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 STRADAQ7RTN6 431 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 PTAR1Q7Z6K3 402 aaPredicted RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 DCP2Q8IU60 420 aaKnown RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 PLPP6Q8IY26 295 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 RYBPQ8N488 228 aaPredicted RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 CCDC185Q8N715 623 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 NETO2Q8NC67 525 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 SNIP1Q8TAD8 396 aaKnown RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 FAM174AQ8TBP5 190 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 CENPIQ92674 756 aaPredicted RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 ISG20Q96AZ6 181 aaKnown RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 C1QTNF2Q9BXJ5 285 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 MAGEH1Q9H213 219 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 FAM207AQ9NSI2 230 aaPredicted RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 TMEM248Q9NWD8 314 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 DNAJC28Q9NX36 388 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 NLGN3Q9NZ94 848 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 KLF15Q9UIH9 416 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 NEU3Q9UQ49 428 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 ITM2BQ9Y287 266 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 SIK3Q9Y2K2 1263 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 PCDHB1Q9Y5F3 818 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 U3KQA8 63 aa8.6□□□□□ -1.03
USP28-203ENST00000537490 TP53BP1Q12888 1972 aaPredicted RBP8.6□□□□□ -1.03
USP28-203ENST00000537490 BAHCC1Q9P281 2608 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 SPTY2D1-AS1A0A0U1RR47 76 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 CXorf51AA0A1B0GTR3 108 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 NEMP2A6NFY4 417 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 KRIT1O00522 736 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 FPGTO14772 594 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 TSPAN6O43657 245 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 KDELR3O43731 214 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 RAMP2O60895 175 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 GSRP00390 522 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 CSF2P04141 144 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 UGT2B4P06133 528 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 PLEKP08567 350 aaPredicted RBP8.59□□□□□ -1.03
USP28-203ENST00000537490 ALPPL2P10696 532 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 KRT3P12035 628 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 ITIH2P19823 946 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 ETFBP38117 255 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 STAT1P42224 750 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 RABIFP47224 123 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 PFN3P60673 137 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 HNRNPKP61978 463 aaKnown RBP eCLIP8.59□□□□□ -1.03
USP28-203ENST00000537490 SNRPD1P62314 119 aaKnown RBP8.59□□□□□ -1.03
USP28-203ENST00000537490 EIF2B5Q13144 721 aaKnown RBP8.59□□□□□ -1.03
USP28-203ENST00000537490 SGCGQ13326 291 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 POLD3Q15054 466 aaPredicted RBP8.59□□□□□ -1.03
USP28-203ENST00000537490 MYLK3Q32MK0 819 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 ZNF805Q5CZA5 627 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 ATXN7L2Q5T6C5 722 aaPredicted RBP8.59□□□□□ -1.03
USP28-203ENST00000537490 TRIM72Q6ZMU5 477 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 LRRC69Q6ZNQ3 347 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 PYROXD2Q8N2H3 581 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 FAM181AQ8N9Y4 354 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 ZNF548Q8NEK5 533 aaPredicted RBP8.59□□□□□ -1.03
USP28-203ENST00000537490 OR2AP1Q8NGE2 309 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 FAM172AQ8WUF8 416 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 ASB12Q8WXK4 309 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 FGF11Q92914 225 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 RAB7BQ96AH8 199 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 TBC1D31Q96DN5 1066 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 KLHL32Q96NJ5 620 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 LENG8Q96PV6 779 aaPredicted RBP8.59□□□□□ -1.03
USP28-203ENST00000537490 KLC2Q9H0B6 622 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 PRORYQ9H606 182 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 RETREG1Q9H6L5 497 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 NOL6Q9H6R4 1146 aaKnown RBP8.59□□□□□ -1.03
USP28-203ENST00000537490 LMBRD1Q9NUN5 540 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 FANCLQ9NW38 375 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 ADAM22Q9P0K1 906 aa8.59□□□□□ -1.03
USP28-203ENST00000537490 IPO11Q9UI26 975 aaKnown RBP8.59□□□□□ -1.03
USP28-203ENST00000537490 TCRBV5S1A1TA0A578 114 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 SIGLEC16A6NMB1 481 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 NEMP1O14524 444 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 AREL1O15033 823 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 RRP8O43159 456 aaKnown RBP8.58□□□□□ -1.04
USP28-203ENST00000537490 BUB1O43683 1085 aa8.58□□□□□ -1.04
USP28-203ENST00000537490 MMP20O60882 483 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms