RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 RYBPQ8N488 228 aaPredicted RBP20.96■□□□□ 0.95
VPS28-206ENST00000526734 LZTR1Q8N653 840 aa20.96■□□□□ 0.95
VPS28-206ENST00000526734 OR8K1Q8NGG5 319 aa20.96■□□□□ 0.95
VPS28-206ENST00000526734 FAM174AQ8TBP5 190 aa20.96■□□□□ 0.95
VPS28-206ENST00000526734 ARHGEF26Q96DR7 871 aa20.96■□□□□ 0.95
VPS28-206ENST00000526734 DNAJC7Q99615 494 aa20.96■□□□□ 0.95
VPS28-206ENST00000526734 THAP2Q9H0W7 228 aa20.96■□□□□ 0.95
VPS28-206ENST00000526734 ZNHIT6Q9NWK9 470 aaKnown RBP20.96■□□□□ 0.95
VPS28-206ENST00000526734 H3BRJ5 948 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 ADRB3P13945 408 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 RHOAP61586 193 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 STAT4Q14765 748 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 GRM3Q14832 879 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 CA9Q16790 459 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 TSR1Q2NL82 804 aaKnown RBP20.95■□□□□ 0.94
VPS28-206ENST00000526734 MYLK3Q32MK0 819 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 ZNF805Q5CZA5 627 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 CCDC122Q5T0U0 273 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 KIAA1161Q6NSJ0 714 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 GLRX5Q86SX6 157 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 TEKT4Q8WW24 435 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 KCTD15Q96SI1 283 aaPredicted RBP20.95■□□□□ 0.94
VPS28-206ENST00000526734 ELF4Q99607 663 aaPredicted RBP20.95■□□□□ 0.94
VPS28-206ENST00000526734 CDC6Q99741 560 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 ERVMER34-1Q9H9K5 563 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 UBA2Q9UBT2 640 aaPredicted RBP20.95■□□□□ 0.94
VPS28-206ENST00000526734 ANAPC7Q9UJX3 599 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 PCOLCE2Q9UKZ9 415 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 MFHAS1Q9Y4C4 1052 aa20.95■□□□□ 0.94
VPS28-206ENST00000526734 A0A1B0GTQ1 180 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 A0A1W2PQU0 124 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 SSU72P8A0A1W2PR75 194 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 H0Y8X5 98 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 TLR4O00206 839 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 KRIT1O00522 736 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 WNT1P04628 370 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 ERCC2P18074 760 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 MAT2AP31153 395 aaKnown RBP20.94■□□□□ 0.94
VPS28-206ENST00000526734 AKT2P31751 481 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 ARL4AP40617 200 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 GRK6P43250 576 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 ARRB1P49407 418 aaPredicted RBP20.94■□□□□ 0.94
VPS28-206ENST00000526734 NXPH1P58417 271 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 TRIP6Q15654 476 aaKnown RBP20.94■□□□□ 0.94
VPS28-206ENST00000526734 DPYSL2Q16555 572 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 PPP6R3Q5H9R7 873 aaPredicted RBP20.94■□□□□ 0.94
VPS28-206ENST00000526734 LAYNQ6UX15 382 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 VSTM4Q8IW00 320 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 NUP85Q9BW27 656 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 NENFQ9UMX5 172 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 ACTL7AQ9Y615 435 aa20.94■□□□□ 0.94
VPS28-206ENST00000526734 MYO1FO00160 1098 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 TSPAN6O43657 245 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 PRAMEF11O60813 436 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 CBFA2T3O75081 653 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 PCDH8O95206 1070 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 HNRNPA2B1P22626 353 aaKnown RBP20.93■□□□□ 0.94
VPS28-206ENST00000526734 SUOXP51687 545 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 RPS21P63220 83 aaKnown RBP20.93■□□□□ 0.94
VPS28-206ENST00000526734 SLC18A3Q16572 532 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 ZNF284Q2VY69 593 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 AFMIDQ63HM1 303 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 PARS2Q7L3T8 475 aaKnown RBP20.93■□□□□ 0.94
VPS28-206ENST00000526734 SETD7Q8WTS6 366 aaKnown RBP20.93■□□□□ 0.94
VPS28-206ENST00000526734 FEM1CQ96JP0 617 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 PDFQ9HBH1 243 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 UVRAGQ9P2Y5 699 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 FADS3Q9Y5Q0 445 aa20.93■□□□□ 0.94
VPS28-206ENST00000526734 SPAARA0A1B0GVQ0 90 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 EIF4A3P38919 411 aaKnown RBP20.92■□□□□ 0.94
VPS28-206ENST00000526734 MAPK8IP2Q13387 824 aaPredicted RBP20.92■□□□□ 0.94
VPS28-206ENST00000526734 DPYSQ14117 519 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 RFTN1Q14699 578 aaPredicted RBP20.92■□□□□ 0.94
VPS28-206ENST00000526734 TMEM259Q4ZIN3 620 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 KCNT1Q5JUK3 1230 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 GDPD4Q6W3E5 623 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 LEKR1Q6ZMV7 388 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 TMEM145Q8NBT3 493 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 BAHD1Q8TBE0 780 aaPredicted RBP20.92■□□□□ 0.94
VPS28-206ENST00000526734 CTNNBL1Q8WYA6 563 aaPredicted RBP20.92■□□□□ 0.94
VPS28-206ENST00000526734 CPEB1Q9BZB8 566 aaKnown RBP20.92■□□□□ 0.94
VPS28-206ENST00000526734 KLC2Q9H0B6 622 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 DEF6Q9H4E7 631 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 CWC15Q9P013 229 aaKnown RBP20.92■□□□□ 0.94
VPS28-206ENST00000526734 RCOR3Q9P2K3 495 aaPredicted RBP20.92■□□□□ 0.94
VPS28-206ENST00000526734 DKK3Q9UBP4 350 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 APOBEC2Q9Y235 224 aaKnown RBP20.92■□□□□ 0.94
VPS28-206ENST00000526734 PLXNA2O75051 1894 aa20.92■□□□□ 0.94
VPS28-206ENST00000526734 C16orf96A6NNT2 1141 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 WNT9AO14904 365 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 UGT2B4P06133 528 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 H2AFZP0C0S5 128 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 RXRGP48443 463 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 PAPOLAP51003 745 aaKnown RBP20.91■□□□□ 0.94
VPS28-206ENST00000526734 FOXC1Q12948 553 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 HADHQ16836 314 aaKnown RBP20.91■□□□□ 0.94
VPS28-206ENST00000526734 ATXN7L2Q5T6C5 722 aaPredicted RBP20.91■□□□□ 0.94
VPS28-206ENST00000526734 TMCO4Q5TGY1 634 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 H2AFVQ71UI9 128 aa20.91■□□□□ 0.94
VPS28-206ENST00000526734 OR6K2Q8NGY2 324 aa20.91■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms