RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 GOLGA8NF8WBI6 632 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 GRID2O43424 1007 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 ZMPSTE24O75844 475 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 ARNTP27540 789 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 SERPINB5P36952 375 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 PPARGP37231 505 aaPredicted RBP21.5■■□□□ 1.03
VPS28-205ENST00000526204 AFMIDQ63HM1 303 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 KIAA0930Q6ICG6 404 aaPredicted RBP21.5■■□□□ 1.03
VPS28-205ENST00000526204 CXCL17Q6UXB2 119 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 RANBP10Q6VN20 620 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 KYQ8NBH2 561 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 C2CD4AQ8NCU7 369 aaPredicted RBP21.5■■□□□ 1.03
VPS28-205ENST00000526204 ZNF419Q96HQ0 510 aaPredicted RBP21.5■■□□□ 1.03
VPS28-205ENST00000526204 MRPL46Q9H2W6 279 aaKnown RBP21.5■■□□□ 1.03
VPS28-205ENST00000526204 PDP2Q9P2J9 529 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 XPR1Q9UBH6 696 aa21.5■■□□□ 1.03
VPS28-205ENST00000526204 DLX3O60479 287 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 NPHS1O60500 1241 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 EPHA3P29320 983 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 CD151P48509 253 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 SLC5A3P53794 718 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 MPP1Q00013 466 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 POU4F1Q01851 419 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 NRG1Q02297 640 aaPredicted RBP21.49■■□□□ 1.03
VPS28-205ENST00000526204 TUSC3Q13454 348 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 PEX6Q13608 980 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 CD300LGQ6UXG3 332 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 KBTBD6Q86V97 674 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 SPATA2LQ8IUW3 424 aaPredicted RBP21.49■■□□□ 1.03
VPS28-205ENST00000526204 GABPB2Q8TAK5 448 aaPredicted RBP21.49■■□□□ 1.03
VPS28-205ENST00000526204 GPR78Q96P69 363 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 TREX1Q9NSU2 369 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 TBC1D13Q9NVG8 400 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 CAMSAP3Q9P1Y5 1249 aaPredicted RBP21.49■■□□□ 1.03
VPS28-205ENST00000526204 ZDHHC2Q9UIJ5 367 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 PADI3Q9ULW8 664 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 A0A0U1RQF3 1178 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 CYLC2Q14093 348 aaPredicted RBP21.49■■□□□ 1.03
VPS28-205ENST00000526204 CNGA3Q16281 694 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 TCHHL1Q5QJ38 904 aaPredicted RBP21.49■■□□□ 1.03
VPS28-205ENST00000526204 KIAA0408Q6ZU52 694 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 CEP97Q8IW35 865 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 RTL3Q8N8U3 475 aaKnown RBP21.49■■□□□ 1.03
VPS28-205ENST00000526204 TMEM209Q96SK2 561 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 MRPL57Q9BQC6 102 aaKnown RBP21.49■■□□□ 1.03
VPS28-205ENST00000526204 FTHL17Q9BXU8 183 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 NUF2Q9BZD4 464 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 PPP1R12CQ9BZL4 782 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 KLHL4Q9C0H6 718 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 NCKIPSDQ9NZQ3 722 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 STK39Q9UEW8 545 aa21.49■■□□□ 1.03
VPS28-205ENST00000526204 NUP205Q92621 2012 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 NEMP1O14524 444 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 PMPCBO75439 489 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 PGK1P00558 417 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 HLA-DQB2P05538 268 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 TYMPP19971 482 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 SLC1A2P43004 574 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 NUDT2P50583 147 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 SLC12A2P55011 1212 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 HERC3Q15034 1050 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 C17orf99Q6UX52 265 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 PIWIL4Q7Z3Z4 852 aaKnown RBP21.48■■□□□ 1.03
VPS28-205ENST00000526204 SNX32Q86XE0 403 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 PDSS2Q86YH6 399 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 CASP10Q92851 521 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 NXNL1Q96CM4 212 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 ELMO2Q96JJ3 720 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 SUSD3Q96L08 255 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 YIPF3Q9GZM5 350 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 ZNF385DQ9H6B1 395 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 SFMBT1Q9UHJ3 866 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 VPS28Q9UK41 221 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 ASB3Q9Y575 518 aa21.48■■□□□ 1.03
VPS28-205ENST00000526204 TNFRSF10BO14763 440 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 AIM2O14862 343 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 SORBS2O94875 1100 aaKnown RBP21.47■■□□□ 1.03
VPS28-205ENST00000526204 GRIK1P39086 918 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 ZNF470Q6ECI4 717 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 LSMEM2Q8N112 164 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 MRGPRX2Q96LB1 330 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 TRPV6Q9H1D0 765 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 SPATS2LQ9NUQ6 558 aaKnown RBP21.47■■□□□ 1.03
VPS28-205ENST00000526204 FBXO5Q9UKT4 447 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 SHROOM3Q8TF72 1996 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 DOCK3Q8IZD9 2030 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 WASH4PA8MWX3 477 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 KCNU1A8MYU2 1149 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 E9PAM4 449 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 CD52P31358 61 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 DNAJB13P59910 316 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 ARTNQ5T4W7 220 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 RNF111Q6ZNA4 994 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 MFSD6LQ8IWD5 586 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 CALML6Q8TD86 181 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 HASPINQ8TF76 798 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 MOCOSQ96EN8 888 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 C1orf74Q96LT6 269 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 SPC25Q9HBM1 224 aa21.47■■□□□ 1.03
VPS28-205ENST00000526204 ARNT2Q9HBZ2 717 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms