RNA–Protein interactions for RNA: ENST00000523441.1

SDCBP-211, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 543 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-211ENST00000523441 TPP1O14773 563 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 PAGE1O75459 146 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 LETM1O95202 739 aaPredicted RBP11.85□□□□□ -0.51
SDCBP-211ENST00000523441 F13A1P00488 732 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 CTSEP14091 401 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 CR2P20023 1033 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 MLLT3P42568 568 aaPredicted RBP11.85□□□□□ -0.51
SDCBP-211ENST00000523441 GPD2P43304 727 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 SYKP43405 635 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 ACADSBP45954 432 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 ENPEPQ07075 957 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 DPYDQ12882 1025 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 STILQ15468 1287 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 PHF19Q5T6S3 580 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 WDR48Q8TAF3 677 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 TSACCQ96A04 125 aaPredicted RBP11.85□□□□□ -0.51
SDCBP-211ENST00000523441 TSG101Q99816 390 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 HDAC8Q9BY41 377 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 GTPBP4Q9BZE4 634 aaKnown RBP11.85□□□□□ -0.51
SDCBP-211ENST00000523441 TM6SF2Q9BZW4 377 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 ACP6Q9NPH0 428 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 ZNF71Q9NQZ8 489 aaPredicted RBP11.85□□□□□ -0.51
SDCBP-211ENST00000523441 GPR27Q9NS67 375 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 MPP6Q9NZW5 540 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 DACH1Q9UI36 760 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 HS3ST2Q9Y278 367 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 FCF1Q9Y324 198 aaKnown RBP11.85□□□□□ -0.51
SDCBP-211ENST00000523441 COQ4Q9Y3A0 265 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 PCDHGA7Q9Y5G6 932 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 WASF2Q9Y6W5 498 aa11.85□□□□□ -0.51
SDCBP-211ENST00000523441 BSNQ9UPA5 3926 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 A0A1W2PQM1 296 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 TRIM49BA6NDI0 452 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 LMO7DNF2Z398 122 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 NTN3O00634 580 aaPredicted RBP11.84□□□□□ -0.51
SDCBP-211ENST00000523441 THAP12O43422 761 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 CLDN11O75508 207 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 IGLV3-25P01717 112 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 ZSCAN22P10073 491 aaPredicted RBP11.84□□□□□ -0.51
SDCBP-211ENST00000523441 SLC2A3P11169 496 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 L1CAMP32004 1257 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 ABL2P42684 1182 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 FMO5P49326 533 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 CCNHP51946 323 aaPredicted RBP11.84□□□□□ -0.51
SDCBP-211ENST00000523441 NDUFA8P51970 172 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 PTK2BQ14289 1009 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 EDRF1Q3B7T1 1238 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 XKR5Q6UX68 686 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 LEKR1Q6ZMV7 388 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 PASD1Q8IV76 773 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 FAM174AQ8TBP5 190 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 ZNF564Q8TBZ8 553 aaPredicted RBP11.84□□□□□ -0.51
SDCBP-211ENST00000523441 KLF6Q99612 283 aaPredicted RBP11.84□□□□□ -0.51
SDCBP-211ENST00000523441 FUCA2Q9BTY2 467 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 TRIM62Q9BVG3 475 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 LRRN3Q9H3W5 708 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 TMPRSS4Q9NRS4 437 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 GEMIN8Q9NWZ8 242 aaKnown RBP11.84□□□□□ -0.51
SDCBP-211ENST00000523441 ARMCX3Q9UH62 379 aaPredicted RBP11.84□□□□□ -0.51
SDCBP-211ENST00000523441 GPR34Q9UPC5 381 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 MAN2B2Q9Y2E5 1009 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 SPTAN1Q13813 2472 aaKnown RBP11.84□□□□□ -0.51
SDCBP-211ENST00000523441 MYO9AB2RTY4 2548 aa11.84□□□□□ -0.51
SDCBP-211ENST00000523441 RELNP78509 3460 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 NBASA2RRP1 2371 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 LRRK1Q38SD2 2015 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 K7ELQ4 463 aaPredicted RBP11.83□□□□□ -0.52
SDCBP-211ENST00000523441 M0QYT0 321 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 MMP20O60882 483 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 SRGAP2O75044 1071 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 ITIH2P19823 946 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 ITGB7P26010 798 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 IGFALSP35858 605 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 EIF4A3P38919 411 aaKnown RBP11.83□□□□□ -0.52
SDCBP-211ENST00000523441 USP8P40818 1118 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 VASPP50552 380 aaPredicted RBP11.83□□□□□ -0.52
SDCBP-211ENST00000523441 PMS1P54277 932 aaKnown RBP11.83□□□□□ -0.52
SDCBP-211ENST00000523441 CDH4P55283 916 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 RNASE9P60153 205 aaKnown RBP11.83□□□□□ -0.52
SDCBP-211ENST00000523441 PPARDQ03181 441 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 KCNAB2Q13303 367 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 EIF3IQ13347 325 aaKnown RBP11.83□□□□□ -0.52
SDCBP-211ENST00000523441 PKP1Q13835 747 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 NCAPHQ15003 741 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 ANKRD40Q6AI12 368 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 SFTPA2Q8IWL1 248 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 ARL10Q8N8L6 244 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 SCG3Q8WXD2 468 aaKnown RBP11.83□□□□□ -0.52
SDCBP-211ENST00000523441 SLC35C1Q96A29 364 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 TMEM74Q96NL1 305 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 MED15Q96RN5 788 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 SEMA3CQ99985 751 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 HEPHQ9BQS7 1158 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 WRAP53Q9BUR4 548 aaKnown RBP11.83□□□□□ -0.52
SDCBP-211ENST00000523441 THAP9Q9H5L6 903 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 LRRC4CQ9HCJ2 640 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 MBNL1Q9NR56 388 aaKnown RBP11.83□□□□□ -0.52
SDCBP-211ENST00000523441 USP25Q9UHP3 1055 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 CFAP45Q9UL16 551 aa11.83□□□□□ -0.52
SDCBP-211ENST00000523441 PLAAQ9Y263 795 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms