RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 MTPAPQ9NVV4 582 aaKnown RBP eCLIP-0.72□□□□□ -2.52
RNU6-539P-201ENST00000516665 ZMYND8Q9ULU4 1186 aaPredicted RBP-0.72□□□□□ -2.52
RNU6-539P-201ENST00000516665 IPPQ9Y573 584 aa-0.72□□□□□ -2.52
RNU6-539P-201ENST00000516665 SNX9Q9Y5X1 595 aa-0.72□□□□□ -2.52
RNU6-539P-201ENST00000516665 CCDC163A0A0D9SF12 145 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 hDV102S1A0JD36 115 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 CPED1A4D0V7 1026 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 KDM4EB2RXH2 506 aaPredicted RBP-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 CD3EAPO15446 510 aaKnown RBP-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 IGKV4-1P06312 121 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 SLC3A2P08195 630 aaKnown RBP-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 ASNSP08243 561 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 VDRP11473 427 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 ELK1P19419 428 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 EDNRBP24530 442 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 SMARCA1P28370 1054 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 RPL3P39023 403 aaKnown RBP-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 GATMP50440 423 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 CDH12P55289 794 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 IL2P60568 153 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 CYP4A11Q02928 519 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 PKP1Q13835 747 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 KRTAP13-2Q52LG2 175 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 ZNF326Q5BKZ1 582 aaKnown RBP-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 C11orf74Q86VG3 221 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 EXD3Q8N9H8 876 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 Q8N9L7 120 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 GPT2Q8TD30 523 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 IP6K1Q92551 441 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 SEMA4DQ92854 862 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 HDAC10Q969S8 669 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 ESAMQ96AP7 390 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 STAMBPL1Q96FJ0 436 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 SERAC1Q96JX3 654 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 BUD13Q9BRD0 619 aaKnown RBP eCLIP-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 BCL2L13Q9BXK5 485 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 TFB2MQ9H5Q4 396 aaKnown RBP-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 NOX4Q9NPH5 578 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 MAN1C1Q9NR34 630 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 IL17CQ9P0M4 197 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 KLK12Q9UKR0 248 aa-0.73□□□□□ -2.53
RNU6-539P-201ENST00000516665 LOC101059948A0A1B0GTJ6 334 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 ARHGAP10A1A4S6 786 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 MAGEB4O15481 346 aaPredicted RBP-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 DFNA5O60443 496 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 GAGE7O76087 117 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 CLDN7O95471 211 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 C9P02748 559 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 LCKP06239 509 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 PARP1P09874 1014 aaKnown RBP-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 FTH1P19P0C7X4 201 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 GAGE12FP0CL80 117 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 GAGE12GP0CL81 117 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 GAGE12IP0CL82 117 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 NFKBIAP25963 317 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 SLC11A2P49281 568 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 WNT3P56703 355 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 MECOMQ03112 1051 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 GAGE1Q13065 139 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 GAGE4Q13068 117 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 GALNT3Q14435 633 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 OASLQ15646 514 aaKnown RBP-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 FNDC3BQ53EP0 1204 aaKnown RBP-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 ZC2HC1CQ53FD0 456 aaPredicted RBP-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 GLE1Q53GS7 698 aaKnown RBP-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 PDSS1Q5T2R2 415 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 IL27RAQ6UWB1 636 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 GFRALQ6UXV0 394 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 KCTD20Q7Z5Y7 419 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 TMEM219Q86XT9 240 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 P3H2Q8IVL5 708 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 LSMEM2Q8N112 164 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 PRAC1Q96KF2 57 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 ZNF582Q96NG8 517 aaPredicted RBP-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 FEZ1Q99689 392 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 SYT15Q9BQS2 421 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 LMF2Q9BU23 707 aaKnown RBP-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 PLEKHA5Q9HAU0 1116 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 INPP5EQ9NRR6 644 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 DNAJC28Q9NX36 388 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 ZNF319Q9P2F9 582 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 LRWD1Q9UFC0 647 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 PLCL2Q9UPR0 1127 aa-0.74□□□□□ -2.53
RNU6-539P-201ENST00000516665 ZNF840PA6NDX5 716 aa-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 GOLGA8AA7E2F4 631 aa-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 MSI1O43347 362 aaKnown RBP-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 CCNT2O60583 730 aaKnown RBP-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 MAP4K4O95819 1239 aaPredicted RBP-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 ITGA2P17301 1181 aa-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 YY1P25490 414 aa-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 NTSR1P30989 418 aa-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 SLC8A1P32418 973 aa-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 PGDP52209 483 aa-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 HDLBPQ00341 1268 aaKnown RBP-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 MTAPQ13126 283 aa-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 NECTIN1Q15223 517 aa-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 PCBP1Q15365 356 aaKnown RBP eCLIP-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 SF3A1Q15459 793 aaKnown RBP-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 SIRPB2Q5JXA9 342 aa-0.75□□□□□ -2.53
RNU6-539P-201ENST00000516665 C10orf76Q5T2E6 689 aa-0.75□□□□□ -2.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms