RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 PGAP3Q96FM1 320 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SIPA1Q96FS4 1042 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EEF2KMTQ96G04 330 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZDHHC12Q96GR4 267 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PDLIM5Q96HC4 596 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ERO1AQ96HE7 468 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRR11Q96HE9 360 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PGAM5Q96HS1 289 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 VPS39Q96JC1 886 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 VPS50Q96JG6 964 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMX3Q96JJ7 454 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZNF668Q96K58 619 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PBKQ96KB5 322 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CABS1Q96KC9 395 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PPP1R13BQ96KQ4 1090 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC17Q96LX7 622 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FAM227BQ96M60 508 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CCDC114Q96M63 670 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 AK8Q96MA6 479 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 C5orf34Q96MH7 638 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HS6ST2Q96MM7 605 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NLRP4Q96MN2 994 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CFAP57Q96MR6 1250 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CMTM3Q96MX0 182 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RUNDC3BQ96NL0 473 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CAMK1GQ96NX5 476 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DACH2Q96NX9 599 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 BBC3Q96PG8 261 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DUX5Q96PT3 197 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LENG8Q96PV6 779 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TMEM237Q96Q45 408 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GCNAQ96QF7 691 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NR1H4Q96RI1 486 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FNBP1Q96RU3 617 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OSBPL9Q96SU4 736 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MAP7D2Q96T17 732 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GPHA2Q96T91 129 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ATP6V0BQ99437 205 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CD180Q99467 661 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EGFL8Q99944 293 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LBHD1Q9BQE6 289 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FERMT1Q9BQL6 677 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FDXACB1Q9BRP7 624 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TCHPQ9BT92 498 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 WACQ9BTA9 647 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TRMOQ9BU70 441 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TUBB6Q9BUF5 446 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRI1Q9BV20 369 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 THUMPD3Q9BV44 507 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 APOL6Q9BWW8 343 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 C1QTNF7Q9BXJ2 289 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 AMNQ9BXJ7 453 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TEX13BQ9BXU2 312 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ITPAQ9BY32 194 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FUT8Q9BYC5 575 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRPL1Q9BYD6 325 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CPEB1Q9BZB8 566 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 FTOQ9C0B1 505 aaKnown RBP eCLIP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TINAGL1Q9GZM7 467 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NYXQ9GZU5 481 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HAPLN2Q9GZV7 340 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PCDHAC1Q9H158 963 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 HSD3B7Q9H2F3 369 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 RANBP17Q9H2T7 1088 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MMADHCQ9H3L0 296 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 CHMP4BQ9H444 224 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OSGEPL1Q9H4B0 414 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 PRDM12Q9H4Q4 367 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 NCOR1P1Q9H4R4 102 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EBF3Q9H4W6 596 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GSTO2Q9H4Y5 243 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 THAP9Q9H5L6 903 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 OPA3Q9H6K4 179 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SH2D4AQ9H788 454 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TTC12Q9H892 705 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 KAT14Q9H8E8 782 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SYNPO2LQ9H987 977 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 VPS37BQ9H9H4 285 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MRPL44Q9H9J2 332 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 UNKLQ9H9P5 680 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIN28AQ9H9Z2 209 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MLXIPQ9HAP2 919 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 BRF2Q9HAW0 419 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 GLOD4Q9HC38 313 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 IL1RAPL2Q9NP60 686 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DDX4Q9NQI0 724 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 POLE3Q9NRF9 147 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SNTG1Q9NSN8 517 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ZBTB40Q9NUA8 1239 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DECR2Q9NUI1 292 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 LIN7CQ9NUP9 197 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 SPATS2LQ9NUQ6 558 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TBC1D23Q9NUY8 699 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 ANO10Q9NW15 660 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 BEX4Q9NWD9 120 aaPredicted RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 MCM9Q9NXL9 1143 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 DDX43Q9NXZ2 648 aaKnown RBP0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 TAS2R3Q9NYW6 316 aa0.61□□□□□ -2.31
RNU4-54P-201ENST00000516428 AIPL1Q9NZN9 384 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms