RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 TMEM110Q86TL2 294 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 CENPSQ8N2Z9 138 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 PQLC3Q8N755 202 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 RP9Q8TA86 221 aaKnown RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 DLG3Q92796 817 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 SETD4Q9NVD3 440 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 PLK2Q9NYY3 685 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 RIMS3Q9UJD0 308 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 HES2Q9Y543 173 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 MDM4O15151 490 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 HDAC3O15379 428 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 CLOCKO15516 846 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 COL6A2P12110 1019 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 PORP16435 677 aaPredicted RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 CNTFP26441 200 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 PSMB4P28070 264 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 ARL1P40616 181 aaPredicted RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 CD97P48960 835 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 RELAQ04206 551 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 SLC10A2Q12908 348 aaPredicted RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 RPS6KA2Q15349 733 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 GALNT18Q6P9A2 607 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 BBS5Q8N3I7 341 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 CBR4Q8N4T8 237 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 OR6J1Q8NGC5 347 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 OR52K1Q8NGK4 314 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 DQX1Q8TE96 717 aaKnown RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 SLC35F5Q8WV83 523 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 BORCS5Q969J3 196 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 CCDC138Q96M89 665 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 AGAP2Q99490 1192 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 DRC3Q9H069 523 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 CCDC68Q9H2F9 335 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 SNX25Q9H3E2 840 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 WDR37Q9Y2I8 494 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 PCDHB12Q9Y5F1 795 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 MRPL42Q9Y6G3 142 aaKnown RBP9.77□□□□□ -0.85
VCAN-210ENST00000513960 DGKBQ9Y6T7 804 aa9.77□□□□□ -0.85
VCAN-210ENST00000513960 ATP6AP2A0A1C7CYW4 349 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 TRIM38O00635 465 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 PPEF2O14830 753 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 ATP6AP2O75787 350 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 SRP72O76094 671 aaKnown RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 KCNH1O95259 989 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 HSPA8P11142 646 aaKnown RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 HNRNPLP14866 589 aaKnown RBP eCLIP9.76□□□□□ -0.851e-9■■■■■ 31.5
VCAN-210ENST00000513960 TSPAN8P19075 237 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 IL4RP24394 825 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 CA8P35219 290 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 IKBKEQ14164 716 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 ZNF792Q3KQV3 632 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 NOTUMQ6P988 496 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 UNC93AQ86WB7 457 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 PGAM4Q8N0Y7 254 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 APBB2Q92870 758 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 PLEKHA8Q96JA3 519 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 VPS50Q96JG6 964 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 SOX17Q9H6I2 414 aaPredicted RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 SFMBT1Q9UHJ3 866 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 AP4E1Q9UPM8 1137 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 DERAQ9Y315 318 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 MFHAS1Q9Y4C4 1052 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 E2F6O75461 281 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 RGS21Q2M5E4 152 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 ZIK1Q3SY52 487 aaPredicted RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 DCAF6Q58WW2 860 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 FAM131BQ86XD5 332 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 PARP8Q8N3A8 854 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 LRRC52Q8N7C0 313 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 LRRC39Q96DD0 335 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 ZNF408Q9H9D4 720 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 BFARQ9NZS9 450 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 TMA7Q9Y2S6 64 aaKnown RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 RNF11Q9Y3C5 154 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 MYO18AQ92614 2054 aaKnown RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 C11orf97A0A1B0GVM6 126 aaPredicted RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 BCL10O95999 233 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 ARSAP15289 507 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 ZNF182P17025 639 aaPredicted RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 BCAT1P54687 386 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 STX1BP61266 288 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 BST2Q10589 180 aaKnown RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 ZNF423Q2M1K9 1284 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 HABP4Q5JVS0 413 aaKnown RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 OTUD3Q5T2D3 398 aaPredicted RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 EPGNQ6UW88 154 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 BPIFB6Q8NFQ5 453 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 HPS1Q92902 700 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 C18orf25Q96B23 403 aaPredicted RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 ZMAT2Q96NC0 199 aaKnown RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 BEGAINQ9BUH8 593 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 ACE2Q9BYF1 805 aaPredicted RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 RBM38Q9H0Z9 239 aaKnown RBP9.76□□□□□ -0.85
VCAN-210ENST00000513960 PNPLA8Q9NP80 782 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 RNF19AQ9NV58 838 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 ANK1P16157 1881 aa9.76□□□□□ -0.85
VCAN-210ENST00000513960 FUOMA2VDF0 154 aa9.75□□□□□ -0.85
VCAN-210ENST00000513960 RRN3P2A6NIE6 340 aa9.75□□□□□ -0.85
VCAN-210ENST00000513960 E7ENX8 843 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms