RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 KLHL33A6NCF5 533 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 M0QYT0 321 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 LTA4HP09960 611 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 MAPTP10636 758 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 MMP13P45452 471 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 MVKQ03426 396 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF234Q14588 700 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 C11orf96Q7Z7L8 435 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 DDX53Q86TM3 631 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 PCDH20Q8N6Y1 951 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CDYL2Q8N8U2 506 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 NELL1Q92832 810 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CDK5RAP1Q96SZ6 601 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CD93Q9NPY3 652 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 DDIT4Q9NX09 232 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 RPTORQ8N122 1335 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 I3L521 148 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 PDE2AO00408 941 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 EGFRP00533 1210 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 MYBP10242 640 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 PIK3CBP42338 1070 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CLCN5P51795 746 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 MEA1Q16626 185 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 QSOX2Q6ZRP7 698 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 PTCHD4Q6ZW05 846 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 NT5DC4Q86YG4 428 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CREG2Q8IUH2 290 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 PTCD2Q8WV60 388 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 C1GALT1C1Q96EU7 318 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 GMCL1Q96IK5 515 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 HPDLQ96IR7 371 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 ZNF607Q96SK3 696 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 ARHGAP20Q9P2F6 1191 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CDH7Q9ULB5 785 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 FAM86C2PA6NEL3 165 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 F5H5T6 163 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 F5H6K3 240 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 ATMINO43313 823 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CCNT2O60583 730 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 ITGA10O75578 1167 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 RPLP2P05387 115 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 COX7A2P14406 83 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CYP11B2P19099 503 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 MAGEA12P43365 314 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 SSTP61278 116 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 KLRC3Q07444 240 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 GRAPQ13588 217 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 TCEA2Q15560 299 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 FAM189A2Q15884 450 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 RNF220Q5VTB9 566 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 AFTPHQ6ULP2 937 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 DRAXINQ8NBI3 349 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 GRAPLQ8TC17 118 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 MBOAT7Q96N66 472 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 SCGB3A2Q96PL1 93 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 NODALQ96S42 347 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 FAIM2Q9BWQ8 316 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 SLC39A8Q9C0K1 460 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 PIDD1Q9HB75 910 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 APOC4-APOC2K7ER74 178 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 MAGEB3O15480 346 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 AIREO43918 545 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 VAPBO95292 243 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 APOC2P02655 101 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 MYL3P08590 195 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 DEFA5Q01523 94 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 MTAPQ13126 283 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 PSMD5Q16401 504 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 PTPRNQ16849 979 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 COLGALT2Q8IYK4 626 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 KATNAL2Q8IYT4 538 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CNTD1Q8N815 330 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 DNAJA4Q8WW22 397 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 IL22Q9GZX6 179 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 POMKQ9H5K3 350 aa11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 GNEQ9Y223 722 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 FARSAQ9Y285 508 aaKnown RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CDK12Q9NYV4 1490 aaPredicted RBP11.33□□□□□ -0.6
LIMCH1-217ENST00000512946 CABYRO75952 493 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 CLPXO76031 633 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 GABRB2P47870 512 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 ACOT2P49753 483 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 ATF7IP2Q5U623 682 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 UCMAQ8WVF2 138 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 ITCHQ96J02 903 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 CCDC177Q9NQR7 707 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 GSG1L2A8MUP6 293 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 PSMD11O00231 422 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 SLC22A2O15244 555 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 DDX3YO15523 660 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 AVILO75366 819 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 RPLP0P05388 317 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 CCR3P51677 355 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 PACRGLQ8N7B6 248 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 PIH1D2Q8WWB5 315 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 CREB3L1Q96BA8 519 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 MRPL57Q9BQC6 102 aaKnown RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 PIF1Q9H611 641 aa11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 POLR3BQ9NW08 1133 aaPredicted RBP11.32□□□□□ -0.6
LIMCH1-217ENST00000512946 RGS17Q9UGC6 210 aaPredicted RBP11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms