RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 PTPN2P17706 415 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 POU1F1P28069 291 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 TNFSF8P32971 234 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 RFC1P35251 1148 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 CPOXP36551 454 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 RGS2P41220 211 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 GPR12P47775 334 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 RPS3AP61247 264 aaKnown RBP4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 RPL7AP62424 266 aaKnown RBP4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 GAD2Q05329 585 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 ERV3-1Q14264 604 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 VEPH1Q14D04 833 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 TRIP6Q15654 476 aaKnown RBP4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 SRSF7Q16629 238 aaKnown RBP eCLIP4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 SLC45A4Q5BKX6 768 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 ATG9BQ674R7 924 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 FAM83HQ6ZRV2 1179 aaPredicted RBP4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 SLC46A3Q7Z3Q1 461 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 SERPINA11Q86U17 422 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 FAM217AQ8IXS0 508 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 LRRC57Q8N9N7 239 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 ZMIZ2Q8NF64 920 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 RASSF8Q8NHQ8 419 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 ZNF333Q96JL9 665 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 SLITRK6Q9H5Y7 841 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 MSRB1Q9NZV6 116 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 SEL1LQ9UBV2 794 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 PSAT1Q9Y617 370 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 PIAS3Q9Y6X2 628 aa4.3□□□□□ -1.72
HMGB1P28-201ENST00000507778 ZMYM2Q9UBW7 1377 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 TTBK1Q5TCY1 1321 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 ANKRD18BA2A2Z9 1011 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CGB1A6NKQ9 187 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 MASP2O00187 686 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 HSPB6O14558 160 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 TGFB1I1O43294 461 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 TIPRLO75663 272 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 SCGB1D1O95968 90 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 TOP3BO95985 862 aaKnown RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 HEXAP06865 529 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 IRF1P10914 325 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CHRNB1P11230 501 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CYP19A1P11511 503 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 ZNF8P17098 575 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 PTGER1P34995 402 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 BSGP35613 385 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 ARL3P36405 182 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CENPAP49450 140 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CLNS1AP54105 237 aaKnown RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 RARSP54136 660 aaKnown RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 ARF3P61204 181 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 ARF1P84077 181 aaKnown RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 FOXD4Q12950 439 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 MAMLD1Q13495 774 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 MTX1Q13505 466 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CCNG2Q16589 344 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 GSTA3Q16772 222 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 HIST2H2ACQ16777 129 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 Q4G0T1 1027 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 C10orf25Q5T742 122 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 ITPRIPL1Q6GPH6 555 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 NCAPH2Q6IBW4 605 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CDC73Q6P1J9 531 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 SYCE2Q6PIF2 218 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CPLX2Q6PUV4 134 aaKnown RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CAMK1DQ8IU85 385 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 SUGP2Q8IX01 1082 aaKnown RBP eCLIP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CADM3Q8N126 398 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 ADSSL1Q8N142 457 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 HORMAD2Q8N7B1 307 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 CADM4Q8NFZ8 388 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 MSI2Q96DH6 328 aaKnown RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 TIGD1Q96MW7 591 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 BARD1Q99728 777 aaKnown RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 PIP5K1AQ99755 562 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 TREX2Q9BQ50 279 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 H2AFJQ9BTM1 129 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 B3GNT4Q9C0J1 378 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 TASP1Q9H6P5 420 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 PRKRIP1Q9H875 184 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 BRF2Q9HAW0 419 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 WDR6Q9NNW5 1121 aaKnown RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 TERF2IPQ9NYB0 399 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 SWAP70Q9UH65 585 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 A4GNTQ9UNA3 340 aa4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 ZSCAN21Q9Y5A6 473 aaPredicted RBP4.29□□□□□ -1.72
HMGB1P28-201ENST00000507778 A0A0G2JK05 382 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 A0A1W2PPC1 479 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 FSD2A1L4K1 749 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 TYW5A2RUC4 315 aaKnown RBP4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 LRRC53A6NM62 1247 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 A6NNC1 897 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 ZNF814B7Z6K7 855 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 EBAG9O00559 213 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 LDLRAD4O15165 306 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 MYZAPP0CAP1 466 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 ENO3P13929 434 aaPredicted RBP4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 BDNFP23560 247 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 ICAM3P32942 547 aa4.28□□□□□ -1.72
HMGB1P28-201ENST00000507778 GABRB2P47870 512 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms