RNA–Protein interactions for RNA: ENST00000496197.5

PTPN7-218, Transcript of protein tyrosine phosphatase, non-receptor type 7, human

TSL 2

Gene PTPN7, Length 1,463 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN7-218	ENST00000496197	ANKRD20A1	Q5TYW2	823 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	ANKRD20A3	Q5VUR7	823 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	ALG1L	Q6GMV1	187 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	SYT13	Q7L8C5	426 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	TRMT11	Q7Z4G4	463 aa	Known RBP	13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	KLHL7	Q8IXQ5	586 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	LRRN4CL	Q8ND94	238 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	CCDC114	Q96M63	670 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	MKRN2	Q9H000	416 aa	Known RBP	13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	NOD2	Q9HC29	1040 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	CD93	Q9NPY3	652 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	DRG1	Q9Y295	367 aa	Known RBP	13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	NEU2	Q9Y3R4	380 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	CUL9	Q8IWT3	2517 aa		13.68	□□□□□ -0.22
PTPN7-218	ENST00000496197	C5orf60	A6NFR6	353 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	PIGN	O95427	931 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	METTL18	O95568	372 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	PTGIR	P43119	386 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	SCNN1B	P51168	640 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	TRIP13	Q15645	432 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	HSF5	Q4G112	596 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	EOGT	Q5NDL2	527 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	TAB3	Q8N5C8	712 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	SPATA22	Q8NHS9	363 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	GRIN3A	Q8TCU5	1115 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	NSMCE1	Q8WV22	266 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	SPATA13	Q96N96	652 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	HHIP	Q96QV1	700 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	SEMA3C	Q99985	751 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	ZDHHC6	Q9H6R6	413 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	GLOD4	Q9HC38	313 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	KLHL8	Q9P2G9	620 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	HECA	Q9UBI9	543 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	SUN2	Q9UH99	717 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	GOLGA6L10	A0A0M3HER8	536 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	TCRBV21S2A2	A0A5A6	115 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	TARSL2	A2RTX5	802 aa	Known RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	LEFTY1	O75610	366 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	IGSF6	O95976	241 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	MT-CYB	P00156	380 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	IFNB1	P01574	187 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	GABRG2	P18507	467 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	NDUFV2	P19404	249 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	PSMB4	P28070	264 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	FNTA	P49354	379 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	CLCN5	P51795	746 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	SNRPD1	P62314	119 aa	Known RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	ITK	Q08881	620 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	NSUN2	Q08J23	767 aa	Known RBP eCLIP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	WHAMMP3	Q1A5X7	153 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	MYLK3	Q32MK0	819 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	LRRK1	Q38SD2	2015 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	POM121L1P	Q3SYA9	428 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	FAXC	Q5TGI0	409 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	SDE2	Q6IQ49	451 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	NCEH1	Q6PIU2	408 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	PID1	Q7Z2X4	250 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	BMP8A	Q7Z5Y6	402 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	SRL	Q86TD4	932 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	METTL3	Q86U44	580 aa	Known RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	PRPF39	Q86UA1	669 aa	Known RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	ZSWIM9	Q86XI8	627 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	RYBP	Q8N488	228 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	SPEM1	Q8N4L4	309 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	OXNAD1	Q96HP4	312 aa	Predicted RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	GDAP1L1	Q96MZ0	367 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	NUDCD1	Q96RS6	583 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	RBM15	Q96T37	977 aa	Known RBP eCLIP	13.67	□□□□□ -0.22	3e-6	■■■■□ 20.8
PTPN7-218	ENST00000496197	KRT12	Q99456	494 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	POLR1E	Q9GZS1	481 aa	Known RBP	13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	HOMER3	Q9NSC5	361 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	UBP1	Q9NZI7	540 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	CACNA1I	Q9P0X4	2223 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	AMACR	Q9UHK6	382 aa		13.67	□□□□□ -0.22
PTPN7-218	ENST00000496197	CFAP69	A5D8W1	941 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	CCDC188	H7C350	402 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197		K7ESF4	209 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	PLK4	O00444	970 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	MTSS1	O43312	755 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	SYNCRIP	O60506	623 aa	Known RBP	13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	GCAT	O75600	419 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	CHRNA3	P32297	505 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	RPL22	P35268	128 aa	Known RBP	13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	CD86	P42081	329 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	SKOR1	P84550	965 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	TRAF2	Q12933	501 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	OLIG2	Q13516	323 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	ELAVL3	Q14576	367 aa	Known RBP	13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	ARSI	Q5FYB1	569 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	DNTTIP2	Q5QJE6	756 aa	Known RBP	13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	CAMK1D	Q8IU85	385 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	MMAA	Q8IVH4	418 aa	Known RBP	13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	PLPP6	Q8IY26	295 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	MAML2	Q8IZL2	1156 aa	Predicted RBP	13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	FBXL6	Q8N531	539 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	MDGA1	Q8NFP4	955 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	ATL2	Q8NHH9	583 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	CCDC26	Q8TAB7	109 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	TADA1	Q96BN2	335 aa		13.66	□□□□□ -0.22
PTPN7-218	ENST00000496197	IMP4	Q96G21	291 aa	Known RBP	13.66	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms