RNA–Protein interactions for RNA: ENST00000495515.1

HDAC6-235, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 569 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-235ENST00000495515 OXTRP30559 389 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 ATP5OP48047 213 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 EIF3EP60228 445 aaKnown RBP17.35■□□□□ 0.37
HDAC6-235ENST00000495515 AP1S1P61966 158 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 IFI35P80217 286 aaPredicted RBP17.35■□□□□ 0.37
HDAC6-235ENST00000495515 NHLH1Q02575 133 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 DMWDQ09019 674 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 KLF1Q13351 362 aaPredicted RBP17.35■□□□□ 0.37
HDAC6-235ENST00000495515 PRKD1Q15139 912 aaPredicted RBP17.35■□□□□ 0.37
HDAC6-235ENST00000495515 RALGPS1Q5JS13 557 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 ATXN7L2Q5T6C5 722 aaPredicted RBP17.35■□□□□ 0.37
HDAC6-235ENST00000495515 USP30Q70CQ3 517 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 CACUL1Q86Y37 369 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 CDKL3Q8IVW4 592 aaPredicted RBP17.35■□□□□ 0.37
HDAC6-235ENST00000495515 CHST14Q8NCH0 376 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 ZBTB44Q8NCP5 570 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 PRSS33Q8NF86 280 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 GRIN3AQ8TCU5 1115 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 OMDQ99983 421 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 HERPUD2Q9BSE4 406 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 CPEB1Q9BZB8 566 aaKnown RBP17.35■□□□□ 0.37
HDAC6-235ENST00000495515 SLC6A17Q9H1V8 727 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 PABPC3Q9H361 631 aaKnown RBP17.35■□□□□ 0.37
HDAC6-235ENST00000495515 RBM22Q9NW64 420 aaKnown RBP eCLIP17.35■□□□□ 0.37
HDAC6-235ENST00000495515 CACNA1IQ9P0X4 2223 aa17.35■□□□□ 0.37
HDAC6-235ENST00000495515 KPNA3O00505 521 aaPredicted RBP17.34■□□□□ 0.37
HDAC6-235ENST00000495515 MID1O15344 667 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 LEFTY1O75610 366 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 ATP1A1P05023 1023 aaKnown RBP17.34■□□□□ 0.37
HDAC6-235ENST00000495515 SCNN1BP51168 640 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 ITKQ08881 620 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 TCF15Q12870 199 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 SLC45A4Q5BKX6 768 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 ARSIQ5FYB1 569 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 SRLQ86TD4 932 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 OR6K2Q8NGY2 324 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 GAB3Q8WWW8 586 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 EXOC2Q96KP1 924 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 QKIQ96PU8 341 aaKnown RBP eCLIP17.34■□□□□ 0.37
HDAC6-235ENST00000495515 TUBGCP5Q96RT8 1024 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 NAP1L3Q99457 506 aaPredicted RBP17.34■□□□□ 0.37
HDAC6-235ENST00000495515 VAT1Q99536 393 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 MGME1Q9BQP7 344 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 POLR1EQ9GZS1 481 aaKnown RBP17.34■□□□□ 0.37
HDAC6-235ENST00000495515 NT5MQ9NPB1 228 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 FBXL12Q9NXK8 326 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 SEPT10Q9P0V9 454 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 USP36Q9P275 1121 aaKnown RBP17.34■□□□□ 0.37
HDAC6-235ENST00000495515 EVLQ9UI08 416 aaPredicted RBP17.34■□□□□ 0.37
HDAC6-235ENST00000495515 ZKSCAN5Q9Y2L8 839 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 WASF2Q9Y6W5 498 aa17.34■□□□□ 0.37
HDAC6-235ENST00000495515 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP17.33■□□□□ 0.36
HDAC6-235ENST00000495515 CTAGE9A4FU28 777 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 KCNK1O00180 336 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 RPP40O75818 363 aaKnown RBP17.33■□□□□ 0.36
HDAC6-235ENST00000495515 STK10O94804 968 aaKnown RBP17.33■□□□□ 0.36
HDAC6-235ENST00000495515 JCHAINP01591 159 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 IGLV3-19P01714 112 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 FGGP02679 453 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 RBP3P10745 1247 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 TCP1P17987 556 aaKnown RBP17.33■□□□□ 0.36
HDAC6-235ENST00000495515 CXCR5P32302 372 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 P2RY2P41231 377 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 TPMTP51580 245 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 CFAP58Q5T655 872 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 DARS2Q6PI48 645 aaKnown RBP17.33■□□□□ 0.36
HDAC6-235ENST00000495515 GDPD4Q6W3E5 623 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 SLC36A4Q6YBV0 504 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 LRRN4Q8WUT4 740 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 HTR3CQ8WXA8 447 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 ATOH1Q92858 354 aaPredicted RBP17.33■□□□□ 0.36
HDAC6-235ENST00000495515 ZNF641Q96N77 438 aaPredicted RBP17.33■□□□□ 0.36
HDAC6-235ENST00000495515 NUDCD1Q96RS6 583 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 IL12RB2Q99665 862 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 NAPGQ99747 312 aaPredicted RBP17.33■□□□□ 0.36
HDAC6-235ENST00000495515 ATP13A3Q9H7F0 1226 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 SCUBE2Q9NQ36 999 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 FZD4Q9ULV1 537 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 SNX12Q9UMY4 172 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 CYP8B1Q9UNU6 501 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 TTLL3Q9Y4R7 772 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 CKAP5Q14008 2032 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 NUP205Q92621 2012 aa17.33■□□□□ 0.36
HDAC6-235ENST00000495515 CES2O00748 559 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 SLC7A4O43246 635 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 MAP3K13O43283 966 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 RNASEH2AO75792 299 aaKnown RBP17.32■□□□□ 0.36
HDAC6-235ENST00000495515 CTSLP07711 333 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 SERPINA4P29622 427 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 LONRF2Q1L5Z9 754 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 MAP7D1Q3KQU3 841 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 TEX44Q53QW1 395 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 ZNF805Q5CZA5 627 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 CEP68Q76N32 757 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 C17orf53Q8N3J3 647 aaPredicted RBP17.32■□□□□ 0.36
HDAC6-235ENST00000495515 HDDC3Q8N4P3 179 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 PAF1Q8N7H5 531 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 OSBPL9Q96SU4 736 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 SGK2Q9HBY8 427 aa17.32■□□□□ 0.36
HDAC6-235ENST00000495515 HOMER3Q9NSC5 361 aa17.32■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.1 ms