RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 APOL1O14791 398 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 NRDCO43847 1150 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ZNF806P0C7X5 589 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 ITGB7P26010 798 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 CCDC15Q0P6D6 951 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 LBRQ14739 615 aaKnown RBP16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PIP5KL1Q5T9C9 394 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 KIAA0895LQ68EN5 471 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 NCEH1Q6PIU2 408 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 MFSD7Q6UXD7 560 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 RFX6Q8HWS3 928 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 KATNAL2Q8IYT4 538 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 NSMCE1Q8WV22 266 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SNX19Q92543 992 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 OSBPL1AQ9BXW6 950 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 HDAC8Q9BY41 377 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 TSGA10Q9BZW7 698 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 KDM4CQ9H3R0 1056 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SMOC1Q9H4F8 434 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 TMEM74BQ9NUR3 256 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 SEPT3Q9UH03 358 aa16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 EVLQ9UI08 416 aaPredicted RBP16.52■□□□□ 0.24
MSH5-SAPCD1-206ENST00000491552 PLRG1O43660 514 aaKnown RBP16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 FSBPO95073 299 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PEX11BO96011 259 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ZFXP17010 805 aaPredicted RBP16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CTNNA1P35221 906 aaKnown RBP16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 GARSP41250 739 aaKnown RBP16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MARCKSL1P49006 195 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 NEK3P51956 506 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CCZ1BP86790 482 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CCZ1P86791 482 aaPredicted RBP16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 GBE1Q04446 702 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ZNF235Q14590 738 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SLC9A4Q6AI14 798 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PRR23CQ6ZRP0 262 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ERN2Q76MJ5 926 aaKnown RBP16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 RABEPKQ7Z6M1 372 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 KIAA2013Q8IYS2 634 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PLD5Q8N7P1 536 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 LRRC57Q8N9N7 239 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 C12orf50Q8NA57 414 aaPredicted RBP16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TSEN2Q8NCE0 465 aaKnown RBP16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 KIAA1524Q8TCG1 905 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 DNASE2BQ8WZ79 361 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 KRT35Q92764 455 aa16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ZNF830Q96NB3 372 aaPredicted RBP16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ZBTB32Q9Y2Y4 487 aaPredicted RBP16.51■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 GPR179Q6PRD1 2367 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 OTOGLQ3ZCN5 2332 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 INSIG1O15503 277 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 FOXD2O60548 495 aaPredicted RBP16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ZRANB2O95218 330 aaKnown RBP eCLIP16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MAP3K6O95382 1288 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 UGT2B4P06133 528 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MX2P20592 715 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MAOBP27338 520 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CDKN2BP42772 138 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 RGRP47804 291 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CSNK1DP48730 415 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 RENBPP51606 427 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SLC10A7Q0GE19 358 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 GRM3Q14832 879 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SF3A2Q15428 464 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TAZQ16635 292 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ZNF805Q5CZA5 627 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TIGD7Q6NT04 549 aaPredicted RBP16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 GDPD4Q6W3E5 623 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SPOCD1Q6ZMY3 1216 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PARS2Q7L3T8 475 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 RCOR2Q8IZ40 523 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 BBS5Q8N3I7 341 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CEP76Q8TAP6 659 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 VOPP1Q96AW1 172 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 BIRC7Q96CA5 298 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 RBM41Q96IZ5 413 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 KLHL32Q96NJ5 620 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PSKH2Q96QS6 385 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CPEB1Q9BZB8 566 aaKnown RBP16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 MIR1-1HGQ9H1L0 117 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PREBQ9HCU5 417 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 DTLQ9NZJ0 730 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 SUSD2Q9UGT4 822 aa16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ZFHX2Q9C0A1 2572 aaPredicted RBP16.5■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TBC1D3DA0A087WVF3 549 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TBC1D3IA0A087WXS9 549 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TBC1D3EA0A087X179 549 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TBC1D3KA0A087X1G2 549 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CCDC66A2RUB6 948 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TBC1D3FA6NER0 549 aaPredicted RBP16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 PATE3B3GLJ2 98 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TBC1D3LB9A6J9 549 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 KHNYNO15037 678 aaKnown RBP16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 KRT86O43790 486 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 IGHV4-34P06331 123 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 TBC1D3HP0C7X1 549 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 ADRB3P13945 408 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 GNSP15586 552 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 CTNNA2P26232 953 aa16.49■□□□□ 0.23
MSH5-SAPCD1-206ENST00000491552 HSPA9P38646 679 aaKnown RBP16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms