RNA–Protein interactions for RNA: ENST00000491165.5

USF3-203, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USF3, Length 2,133 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-203ENST00000491165 LEFTY2O00292 366 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 KCNA5P22460 613 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 CDK16Q00536 496 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 ARL13BQ3SXY8 428 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 TTC39BQ5VTQ0 682 aaPredicted RBP23.14■■□□□ 1.3
USF3-203ENST00000491165 C1orf228Q6PIY5 440 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 SKA1Q96BD8 255 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 PLD4Q96BZ4 506 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 RSPRY1Q96DX4 576 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 CFAP36Q96G28 342 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 RNF157Q96PX1 679 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 MIPEPQ99797 713 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 TMEM120AQ9BXJ8 343 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 TDP1Q9NUW8 608 aa23.14■■□□□ 1.3
USF3-203ENST00000491165 AGO1Q9UL18 857 aaKnown RBP23.14■■□□□ 1.3
USF3-203ENST00000491165 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP23.14■■□□□ 1.29
USF3-203ENST00000491165 CFAP69A5D8W1 941 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 CREB3O43889 395 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 AVILO75366 819 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 IL1BP01584 269 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 LMNAP02545 664 aaKnown RBP23.14■■□□□ 1.29
USF3-203ENST00000491165 APOEP02649 317 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 BGNP21810 368 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 SLC6A4P31645 630 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 KPNA1P52294 538 aaPredicted RBP23.14■■□□□ 1.29
USF3-203ENST00000491165 AIF1P55008 147 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 KRT81Q14533 505 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 MAP7D3Q8IWC1 876 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 SH3RF2Q8TEC5 729 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 PTCD3Q96EY7 689 aaKnown RBP23.14■■□□□ 1.29
USF3-203ENST00000491165 P2RY11Q96G91 374 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 NAF1Q96HR8 494 aaKnown RBP23.14■■□□□ 1.29
USF3-203ENST00000491165 BTN2A3PQ96KV6 586 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 HAPLN3Q96S86 360 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 MYADMQ96S97 322 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 IQCGQ9H095 443 aaKnown RBP23.14■■□□□ 1.29
USF3-203ENST00000491165 KCNK13Q9HB14 408 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 USP29Q9HBJ7 922 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 CFAP97Q9P2B7 532 aa23.14■■□□□ 1.29
USF3-203ENST00000491165 MYOFQ9NZM1 2061 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 KCNN4O15554 427 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 LRIG2O94898 1065 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 SLC2A3P11169 496 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 PFKLP17858 780 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 ZBTB16Q05516 673 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 NSL1Q96IY1 281 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 BTBD10Q9BSF8 475 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 UBE2ZQ9H832 354 aaPredicted RBP23.13■■□□□ 1.29
USF3-203ENST00000491165 ARL8BQ9NVJ2 186 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 TTLL3Q9Y4R7 772 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 LRRC42Q9Y546 428 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 MUC3AQ02505 3323 aa23.13■■□□□ 1.29
USF3-203ENST00000491165 COPEO14579 308 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 ENTPD5O75356 428 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 DLDP09622 509 aaKnown RBP23.12■■□□□ 1.29
USF3-203ENST00000491165 SERPINB3P29508 390 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 SERPINB4P48594 390 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 HARS2P49590 506 aaKnown RBP23.12■■□□□ 1.29
USF3-203ENST00000491165 SKIV2LQ15477 1246 aaKnown RBP23.12■■□□□ 1.29
USF3-203ENST00000491165 FAM78AQ5JUQ0 283 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 RAP1GAP2Q684P5 730 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 Q6ZNB5 142 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 PSTKQ8IV42 348 aaKnown RBP23.12■■□□□ 1.29
USF3-203ENST00000491165 ZNF683Q8IZ20 524 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 TTC8Q8TAM2 541 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 SUSD6Q92537 303 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 RTP4Q96DX8 246 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 ASB16Q96NS5 453 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 CADM1Q9BY67 442 aaKnown RBP23.12■■□□□ 1.29
USF3-203ENST00000491165 MFHAS1Q9Y4C4 1052 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 GRXCR2A6NFK2 248 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 KLF11O14901 512 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 SP100P23497 879 aaPredicted RBP23.12■■□□□ 1.29
USF3-203ENST00000491165 VIPR2P41587 438 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 MLLT6P55198 1093 aaPredicted RBP23.12■■□□□ 1.29
USF3-203ENST00000491165 PDK2Q15119 407 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 RFWD3Q6PCD5 774 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 PRPF39Q86UA1 669 aaKnown RBP23.12■■□□□ 1.29
USF3-203ENST00000491165 CTAGE3PQ8IX95 158 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 PLD5Q8N7P1 536 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 SRPK1Q96SB4 655 aaKnown RBP23.12■■□□□ 1.29
USF3-203ENST00000491165 OSBPL2Q9H1P3 480 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 DCLRE1BQ9H816 532 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 CD207Q9UJ71 328 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 VANGL2Q9ULK5 521 aa23.12■■□□□ 1.29
USF3-203ENST00000491165 TRIM49D1C9J1S8 452 aa23.11■■□□□ 1.29
USF3-203ENST00000491165 TRDMT1O14717 391 aaKnown RBP23.11■■□□□ 1.29
USF3-203ENST00000491165 LIN7AO14910 233 aaPredicted RBP23.11■■□□□ 1.29
USF3-203ENST00000491165 KRT37O76014 449 aa23.11■■□□□ 1.29
USF3-203ENST00000491165 TGM2P21980 687 aa23.11■■□□□ 1.29
USF3-203ENST00000491165 MANEALQ5VSG8 457 aa23.11■■□□□ 1.29
USF3-203ENST00000491165 BBS7Q8IWZ6 715 aa23.11■■□□□ 1.29
USF3-203ENST00000491165 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP23.11■■□□□ 1.29
USF3-203ENST00000491165 PPM1NQ8N819 430 aa23.11■■□□□ 1.29
USF3-203ENST00000491165 ATP6V0D2Q8N8Y2 350 aa23.11■■□□□ 1.29
USF3-203ENST00000491165 CSPG4P5Q96PW8 444 aa23.11■■□□□ 1.29
USF3-203ENST00000491165 KLC2Q9H0B6 622 aa23.11■■□□□ 1.29
USF3-203ENST00000491165 ETNK2Q9NVF9 386 aa23.11■■□□□ 1.29
USF3-203ENST00000491165 ZC3H7BQ9UGR2 993 aaKnown RBP23.11■■□□□ 1.29
USF3-203ENST00000491165 ZNF180Q9UJW8 692 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms