RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PNPLA1Q8N8W4 532 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 RP9Q8TA86 221 aaKnown RBP18.18■□□□□ 0.5
VIM-206ENST00000487938 ELMO2Q96JJ3 720 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 CNDP1Q96KN2 507 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 GPR78Q96P69 363 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 VCX3BQ9H321 246 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 NEU3Q9UQ49 428 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 INPP5FQ9Y2H2 1132 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 CEP350Q5VT06 3117 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 ZNF236Q9UL36 1845 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 AP3B1O00203 1094 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 MSI1O43347 362 aaKnown RBP18.18■□□□□ 0.5
VIM-206ENST00000487938 MAFKO60675 156 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 POMCP01189 267 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 PCSK1P29120 753 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 SLC1A2P43004 574 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 THOP1P52888 689 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 AGMOQ6ZNB7 445 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 LRRTM3Q86VH5 581 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 TRAPPC9Q96Q05 1148 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 FCRL5Q96RD9 977 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 OSBPL2Q9H1P3 480 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 SUDS3Q9H7L9 328 aaPredicted RBP18.18■□□□□ 0.5
VIM-206ENST00000487938 STK39Q9UEW8 545 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 FIS1Q9Y3D6 152 aa18.18■□□□□ 0.5
VIM-206ENST00000487938 STX16-NPEPL1H3BU86 382 aa18.17■□□□□ 0.5
VIM-206ENST00000487938 PAGE1O75459 146 aa18.17■□□□□ 0.5
VIM-206ENST00000487938 XRCC1P18887 633 aaPredicted RBP18.17■□□□□ 0.5
VIM-206ENST00000487938 PPARGP37231 505 aaPredicted RBP18.17■□□□□ 0.5
VIM-206ENST00000487938 ZNF135P52742 658 aaPredicted RBP18.17■□□□□ 0.5
VIM-206ENST00000487938 MRPS6P82932 125 aaKnown RBP18.17■□□□□ 0.5
VIM-206ENST00000487938 SEPT6Q14141 434 aa18.17■□□□□ 0.5
VIM-206ENST00000487938 UPP1Q16831 310 aa18.17■□□□□ 0.5
VIM-206ENST00000487938 MMEL1Q495T6 779 aa18.17■□□□□ 0.5
VIM-206ENST00000487938 NOMO2Q5JPE7 1267 aa18.17■□□□□ 0.5
VIM-206ENST00000487938 SPRYD7Q5W111 196 aa18.17■□□□□ 0.5
VIM-206ENST00000487938 C16orf89Q6UX73 402 aa18.17■□□□□ 0.5
VIM-206ENST00000487938 PPHLN1Q8NEY8 458 aaKnown RBP18.17■□□□□ 0.5
VIM-206ENST00000487938 GCNAQ96QF7 691 aa18.17■□□□□ 0.5
VIM-206ENST00000487938 TRPV6Q9H1D0 765 aa18.17■□□□□ 0.5
VIM-206ENST00000487938 MYADML2A6NDP7 307 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 NEMP2A6NFY4 417 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 CAPN8A6NHC0 703 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 M0QZ92 97 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 AURKAO14965 403 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 ANXA9O76027 345 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 B3GAT3O94766 335 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 HNRNPLP14866 589 aaKnown RBP eCLIP18.16■□□□□ 0.5
VIM-206ENST00000487938 ALDH1A3P47895 512 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 TAS2R39P59534 338 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 PURAQ00577 322 aaKnown RBP18.16■□□□□ 0.5
VIM-206ENST00000487938 PCSK7Q16549 785 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 FSCN1Q16658 493 aaKnown RBP18.16■□□□□ 0.5
VIM-206ENST00000487938 RNF135Q8IUD6 432 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 CPSF7Q8N684 471 aaKnown RBP18.16■□□□□ 0.5
VIM-206ENST00000487938 IRGQQ8WZA9 623 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 RBM22Q9NW64 420 aaKnown RBP eCLIP18.16■□□□□ 0.5
VIM-206ENST00000487938 HLA-DQB2P05538 268 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 MRPS22P82650 360 aaKnown RBP18.16■□□□□ 0.5
VIM-206ENST00000487938 MS4A2Q01362 244 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 NSUN2Q08J23 767 aaKnown RBP eCLIP18.16■□□□□ 0.5
VIM-206ENST00000487938 UGP2Q16851 508 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 ZNF423Q2M1K9 1284 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 ZNF470Q6ECI4 717 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 BNC2Q6ZN30 1099 aaPredicted RBP18.16■□□□□ 0.5
VIM-206ENST00000487938 CNTN4Q8IWV2 1026 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 HEXDCQ8WVB3 486 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 SERPINI1Q99574 410 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 IL12RB2Q99665 862 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 KATNAL1Q9BW62 490 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 ZNF385DQ9H6B1 395 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 CHST12Q9NRB3 414 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 MPP6Q9NZW5 540 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 VTI1BQ9UEU0 232 aa18.16■□□□□ 0.5
VIM-206ENST00000487938 MATN3O15232 486 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 MOCS2O96007 188 aaPredicted RBP18.15■□□□□ 0.5
VIM-206ENST00000487938 COL6A2P12110 1019 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 DNAJB2P25686 324 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 DPP6P42658 865 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 PRKAA2P54646 552 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 FOLH1Q04609 750 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 GPR162Q16538 588 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 SH2D4BQ5SQS7 431 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 FAM171BQ6P995 826 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 FBXL19Q6PCT2 694 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 CNSTQ6PJW8 725 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 RPS27LQ71UM5 84 aaKnown RBP18.15■□□□□ 0.5
VIM-206ENST00000487938 KDM1BQ8NB78 822 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 TXNDC5Q8NBS9 432 aaKnown RBP18.15■□□□□ 0.5
VIM-206ENST00000487938 FCRL2Q96LA5 508 aaPredicted RBP18.15■□□□□ 0.5
VIM-206ENST00000487938 NDNQ99608 321 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 NPAS2Q99743 824 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 FSD1LQ9BXM9 530 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 DMAP1Q9NPF5 467 aaPredicted RBP18.15■□□□□ 0.5
VIM-206ENST00000487938 ARHGEF38Q9NXL2 777 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 PRPF19Q9UMS4 504 aaKnown RBP18.15■□□□□ 0.5
VIM-206ENST00000487938 TCAF1Q9Y4C2 921 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 CASQ2O14958 399 aaPredicted RBP18.15■□□□□ 0.5
VIM-206ENST00000487938 ODC1P11926 461 aa18.15■□□□□ 0.5
VIM-206ENST00000487938 ARSAP15289 507 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms