RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 SYNCRIPO60506 623 aaKnown RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 ADAM23O75077 832 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 SIN3BO75182 1162 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 PDGFBP01127 241 aaPredicted RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 CD68P34810 354 aaPredicted RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 RPL22P35268 128 aaKnown RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 PTGIRP43119 386 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 CSNK1DP48730 415 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 DR1Q01658 176 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 DSC2Q02487 901 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 NIPAL4Q0D2K0 466 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 DHX34Q14147 1143 aaKnown RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 PPP1R7Q15435 360 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 TRIP13Q15645 432 aaPredicted RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 KCTD19Q17RG1 926 aaPredicted RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 MYLK3Q32MK0 819 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 EOGTQ5NDL2 527 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 C9orf64Q5T6V5 341 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 DPY19L3Q6ZPD9 716 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 MAATS1Q7Z4T9 603 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 SRLQ86TD4 932 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 PLPP6Q8IY26 295 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 STK40Q8N2I9 435 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 GLIS1Q8NBF1 620 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 OR2A12Q8NGT7 310 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 SLCO2A1Q92959 643 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 CLDN23Q96B33 292 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 ERLEC1Q96DZ1 483 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 NUDCD1Q96RS6 583 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 GABRG3Q99928 467 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 SEMA3CQ99985 751 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 POLR1EQ9GZS1 481 aaKnown RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 PCDH9Q9HC56 1237 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 SCUBE2Q9NQ36 999 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 RRAGDQ9NQL2 400 aaPredicted RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 PAK5Q9P286 719 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 HECAQ9UBI9 543 aaPredicted RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 RSPH14Q9UHP6 348 aa12.41□□□□□ -0.42
SDC1-206ENST00000482879 EVLQ9UI08 416 aaPredicted RBP12.41□□□□□ -0.42
SDC1-206ENST00000482879 CHURC1-FNTBB4DL54 471 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 F5H423 210 aaPredicted RBP12.4□□□□□ -0.42
SDC1-206ENST00000482879 INSIG1O15503 277 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 TTI1O43156 1089 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 ATG13O75143 517 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 GJB3O75712 270 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 POP4O95707 220 aaKnown RBP12.4□□□□□ -0.42
SDC1-206ENST00000482879 DCNP07585 359 aaKnown RBP12.4□□□□□ -0.42
SDC1-206ENST00000482879 HOXB2P14652 356 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 NFKB1P19838 968 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 CR2P20023 1033 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 CES1P23141 567 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 VPS41P49754 854 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 CCNHP51946 323 aaPredicted RBP12.4□□□□□ -0.42
SDC1-206ENST00000482879 MRPS25P82663 173 aaKnown RBP12.4□□□□□ -0.42
SDC1-206ENST00000482879 RAD51Q06609 339 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 PRPSAP1Q14558 356 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 STARD3Q14849 445 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 PARP6Q2NL67 630 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 RALGPS1Q5JS13 557 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 ALG1LQ6GMV1 187 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 PKN3Q6P5Z2 889 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 C4orf22Q6V702 233 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 SYDE1Q6ZW31 735 aaPredicted RBP12.4□□□□□ -0.42
SDC1-206ENST00000482879 JAMLQ86YT9 394 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 MMGT1Q8N4V1 131 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 TAB3Q8N5C8 712 aaPredicted RBP12.4□□□□□ -0.42
SDC1-206ENST00000482879 CHST14Q8NCH0 376 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 OR6K2Q8NGY2 324 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 ARRDC2Q8TBH0 407 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 OR8D1Q8WZ84 308 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 FCRL5Q96RD9 977 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 HEPHQ9BQS7 1158 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 SLC25A51Q9H1U9 297 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 GBA3Q9H227 469 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 NOD2Q9HC29 1040 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 PRSS16Q9NQE7 514 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 MMP17Q9ULZ9 603 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 NEU2Q9Y3R4 380 aa12.4□□□□□ -0.42
SDC1-206ENST00000482879 ZDBF2Q9HCK1 2354 aa12.4□□□□□ -0.43
SDC1-206ENST00000482879 CACNA1IQ9P0X4 2223 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 FAM187AA6NFU0 413 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 RAD51CO43502 376 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 METTL18O95568 372 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 SERPINF2P08697 491 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 COL9A1P20849 921 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 PSMB4P28070 264 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 GKP32189 559 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 FDFT1P37268 417 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 CD86P42081 329 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 MAPK8P45983 427 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 RPS9P46781 194 aaKnown RBP12.39□□□□□ -0.43
SDC1-206ENST00000482879 AP1S1P61966 158 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 GPS1Q13098 491 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 CAMK2GQ13555 558 aaPredicted RBP12.39□□□□□ -0.43
SDC1-206ENST00000482879 GAS6Q14393 721 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 CWF19L1Q69YN2 538 aaKnown RBP12.39□□□□□ -0.43
SDC1-206ENST00000482879 KIAA1211LQ6NV74 962 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 NCEH1Q6PIU2 408 aa12.39□□□□□ -0.43
SDC1-206ENST00000482879 NOA1Q8NC60 698 aaKnown RBP12.39□□□□□ -0.43
SDC1-206ENST00000482879 SPATA22Q8NHS9 363 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms