RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 XKR9Q5GH70 373 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 NHSL2Q5HYW2 709 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CRB2Q5IJ48 1285 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 ARMC6Q6NXE6 501 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 FOXR2Q6PJQ5 311 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 PET117Q6UWS5 81 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CRELD2Q6UXH1 353 aaPredicted RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 B3GNT6Q6ZMB0 384 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CATSPERGQ6ZRH7 1159 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 PTCHD4Q6ZW05 846 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 ARMCX2Q7L311 632 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 DGLUCYQ7Z3D6 616 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 DSG4Q86SJ6 1040 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CCDC117Q8IWD4 279 aaPredicted RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 SYCP3Q8IZU3 236 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 NIPA2Q8N8Q9 360 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 MRPL43Q8N983 215 aaKnown RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 NEK11Q8NG66 645 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 KCNE4Q8WWG9 221 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 SLC22A18Q96BI1 424 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 ZNF653Q96CK0 615 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 GCNAQ96QF7 691 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 VKORC1Q9BQB6 163 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 SPATA5L1Q9BVQ7 753 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 TLR10Q9BXR5 811 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 LRRCC1Q9C099 1032 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 STMN4Q9H169 189 aaPredicted RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 DPH5Q9H2P9 285 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 GORASP2Q9H8Y8 452 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 TMEM8AQ9HCN3 771 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 A1CFQ9NQ94 594 aaKnown RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 DDX4Q9NQI0 724 aaKnown RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 RGL1Q9NZL6 768 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 TRPM5Q9NZQ8 1165 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 RNF181Q9P0P0 153 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 SUCLA2Q9P2R7 463 aaPredicted RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 STK39Q9UEW8 545 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 APPL1Q9UKG1 709 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 ZMYND8Q9ULU4 1186 aaPredicted RBP4.28□□□□□ -1.72
VPS41-212ENST00000482217 AGAP1Q9UPQ3 857 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 SORCS3Q9UPU3 1222 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CDYLQ9Y232 598 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 DNAJC16Q9Y2G8 782 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 SNX9Q9Y5X1 595 aa4.28□□□□□ -1.72
VPS41-212ENST00000482217 CCDC195A0A1B0GUA6 201 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 SMIM30A4D0T7 59 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 MBD3L4A6NDZ8 208 aaPredicted RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 MBD3L3A6NE82 208 aaPredicted RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 NCF1BA6NI72 391 aaPredicted RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 NCF1CA8MVU1 366 aaPredicted RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 E7ENX8 843 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 STX16-NPEPL1H3BU86 382 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 L7N2F9 121 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 M0QYG6 137 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 POLRMTO00411 1230 aaKnown RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 RNASET2O00584 256 aaKnown RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 STX16O14662 325 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 ZNF263O14978 683 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 ZNF185O15231 689 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 MAPK13O15264 365 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 POP4O95707 220 aaKnown RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 GPANK1O95872 356 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 SERPINC1P01008 464 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 CFIP05156 583 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 HLA-DOAP06340 250 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 RB1P06400 928 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 ANXA2P07355 339 aaKnown RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 SELLP14151 372 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 IL1R1P14778 569 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 ZNF24P17028 368 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 IL10P22301 178 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 JAK1P23458 1154 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 PTAFRP25105 342 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 AVPR2P30518 371 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 HOXC8P31273 242 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 PSMB10P40306 273 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 SLC11A2P49281 568 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 NPY4RP50391 375 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 GMFBP60983 142 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 PMP22Q01453 160 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 TAP2Q03519 686 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 OCA2Q04671 838 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 KRT17Q04695 432 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 PPATQ06203 517 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 CCDC173Q0VFZ6 552 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 MYO1EQ12965 1108 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 CTBP1Q13363 440 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 DOC2AQ14183 400 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 EFTUD2Q15029 972 aaKnown RBP eCLIP4.27□□□□□ -1.73
VPS41-212ENST00000482217 SEC23BQ15437 767 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 MED22Q15528 200 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 CNGA3Q16281 694 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 AAK1Q2M2I8 961 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 CCDC152Q4G0S7 254 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 GLE1Q53GS7 698 aaKnown RBP4.27□□□□□ -1.73
VPS41-212ENST00000482217 SHEQ5VZ18 495 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 TAPT1Q6NXT6 567 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 TMEM270Q6UE05 265 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 BNIPLQ7Z465 357 aa4.27□□□□□ -1.73
VPS41-212ENST00000482217 ANKS1BQ7Z6G8 1248 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms