RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 IKBIPQ70UQ0 350 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 KDELC2Q7Z4H8 507 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 GPAT4Q86UL3 456 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 CADM3Q8N126 398 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 CCDC89Q8N998 374 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 SLC16A11Q8NCK7 471 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 TMEM116Q8NCL8 245 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 CMASQ8NFW8 434 aaPredicted RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 EME1Q96AY2 570 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 TIGD1Q96MW7 591 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 SERINC2Q96SA4 455 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 CENPOQ9BU64 300 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 STRA6Q9BX79 667 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 WDR6Q9NNW5 1121 aaKnown RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 EIF2B3Q9NR50 452 aaKnown RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 PAPOLBQ9NRJ5 636 aaKnown RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 HAUS2Q9NVX0 235 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 PLEKHB1Q9UF11 243 aaPredicted RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 LIMA1Q9UHB6 759 aaKnown RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 ZNHIT2Q9UHR6 403 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 VPS28Q9UK41 221 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 CORO1CQ9ULV4 474 aaPredicted RBP6.3□□□□□ -1.4
VPS50-212ENST00000476413 DDX52Q9Y2R4 599 aaKnown RBP eCLIP6.3□□□□□ -1.4
VPS50-212ENST00000476413 RABGAP1Q9Y3P9 1069 aa6.3□□□□□ -1.4
VPS50-212ENST00000476413 A0A0G2JK05 382 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 GTPBP1O00178 669 aaKnown RBP6.29□□□□□ -1.4
VPS50-212ENST00000476413 TIMM44O43615 452 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 PAGE4O60829 102 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 TMCC1O94876 653 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 ALOX12P18054 663 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 ATP5F1P24539 256 aaPredicted RBP6.29□□□□□ -1.4
VPS50-212ENST00000476413 YWHAQP27348 245 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 TTKP33981 857 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 RYKP34925 604 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 CENPAP49450 140 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 CLCNKBP51801 687 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 SLC10A2Q12908 348 aaPredicted RBP6.29□□□□□ -1.4
VPS50-212ENST00000476413 ALG11Q2TAA5 492 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 SLC9C1Q4G0N8 1177 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 ZKSCAN2Q63HK3 967 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 ISM2Q6H9L7 571 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 TTI2Q6NXR4 508 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 NCEH1Q6PIU2 408 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 KLHL24Q6TFL4 600 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 DBX2Q6ZNG2 339 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 TTC39CQ8N584 583 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 WDTC1Q8N5D0 677 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 WDFY2Q96P53 400 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 PLEKHA4Q9H4M7 779 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 HCFC1R1Q9NWW0 138 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 CTNNAL1Q9UBT7 734 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 CDH22Q9UJ99 828 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 AGO2Q9UKV8 859 aaKnown RBP6.29□□□□□ -1.4
VPS50-212ENST00000476413 A4GNTQ9UNA3 340 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 LYVE1Q9Y5Y7 322 aa6.29□□□□□ -1.4
VPS50-212ENST00000476413 SNAP23O00161 211 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 EBAG9O00559 213 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 GJB3O75712 270 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 BCAR3O75815 825 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 TOP3BO95985 862 aaKnown RBP6.28□□□□□ -1.4
VPS50-212ENST00000476413 EIF2S1P05198 315 aaKnown RBP6.28□□□□□ -1.4
VPS50-212ENST00000476413 ZNF8P17098 575 aaPredicted RBP6.28□□□□□ -1.4
VPS50-212ENST00000476413 NFKBIAP25963 317 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 POU1F1P28069 291 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 CIITAP33076 1130 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 SLC16A2P36021 539 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 YWHAZP63104 245 aaKnown RBP6.28□□□□□ -1.4
VPS50-212ENST00000476413 CREB5Q02930 508 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 CEBPZQ03701 1054 aaKnown RBP6.28□□□□□ -1.4
VPS50-212ENST00000476413 GSTA3Q16772 222 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 KRTAP15-1Q3LI76 137 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 TTC39AQ5SRH9 613 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 IGFN1Q86VF2 1251 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 TICAM2Q86XR7 235 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 ATOH1Q92858 354 aaPredicted RBP6.28□□□□□ -1.4
VPS50-212ENST00000476413 MAP7D2Q96T17 732 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 FAM118BQ9BPY3 351 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 AAMDCQ9H7C9 122 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 POLR1BQ9H9Y6 1135 aa6.28□□□□□ -1.4
VPS50-212ENST00000476413 ZNF335Q9H4Z2 1342 aaPredicted RBP6.27□□□□□ -1.41
VPS50-212ENST00000476413 FAM237BA0A1B0GVD1 139 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 SMIM35A0A1B0GVV1 85 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 DPPA5A6NC42 116 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 NPIPB11E5RHQ5 1161 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 AP3D1O14617 1153 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 RNMTO43148 476 aaKnown RBP6.27□□□□□ -1.41
VPS50-212ENST00000476413 FIBPO43427 364 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 SLC25A17O43808 307 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 CTSAP10619 480 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 SLC2A4P14672 509 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 PTPN2P17706 415 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 CTPS1P17812 591 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 MPGP29372 298 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 GARSP41250 739 aaKnown RBP6.27□□□□□ -1.41
VPS50-212ENST00000476413 RAD52P43351 418 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 CXCR3P49682 368 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 HDAC4P56524 1084 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 NLRP5P59047 1200 aa6.27□□□□□ -1.41
VPS50-212ENST00000476413 RPS13P62277 151 aaKnown RBP6.27□□□□□ -1.41
VPS50-212ENST00000476413 CUL4AQ13619 759 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms