RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 EIF2S3P41091 472 aaKnown RBP12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RECQLP46063 649 aaPredicted RBP12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 POLR2FP61218 127 aaKnown RBP12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RPS21P63220 83 aaKnown RBP12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 E2F1Q01094 437 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FZD2Q14332 565 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CDCP2Q5VXM1 449 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KYAT3Q6YP21 454 aaKnown RBP12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TRIM72Q6ZMU5 477 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 Q6ZSR6 202 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PARS2Q7L3T8 475 aaKnown RBP12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ZSCAN30Q86W11 494 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 DRC7Q8IY82 874 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SLC30A5Q8TAD4 765 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 NXPE2Q96DL1 559 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 LRIG1Q96JA1 1093 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FEM1CQ96JP0 617 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 MYOCQ99972 504 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 MAGEH1Q9H213 219 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 VPS16Q9H269 839 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 NOL6Q9H6R4 1146 aaKnown RBP12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 DYRK4Q9NR20 520 aa12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HECAQ9UBI9 543 aaPredicted RBP12.47□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SIGLEC16A6NMB1 481 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 C16orf96A6NNT2 1141 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 A6NNZ2 444 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PES1O00541 588 aaKnown RBP12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 AREL1O15033 823 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TSPAN6O43657 245 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 GJB6O95452 261 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 GSRP00390 522 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CSF2P04141 144 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PLEKP08567 350 aaPredicted RBP12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SDC4P31431 198 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RFC1P35251 1148 aaPredicted RBP12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ETFBP38117 255 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ABL2P42684 1182 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ARL13BQ3SXY8 428 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 ZNF805Q5CZA5 627 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 TPRG1LQ5T0D9 272 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 WDR59Q6PJI9 974 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 APTXQ7Z2E3 356 aaKnown RBP12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 PHF13Q86YI8 300 aaPredicted RBP12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CCDC185Q8N715 623 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 SNIP1Q8TAD8 396 aaKnown RBP12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 RAB7BQ96AH8 199 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CENPTQ96BT3 561 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CRELD1Q96HD1 420 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 C11orf70Q9BRQ4 267 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 HSD3B7Q9H2F3 369 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 FAM207AQ9NSI2 230 aaPredicted RBP12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 NLGN3Q9NZ94 848 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KLF15Q9UIH9 416 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CLCA2Q9UQC9 943 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 CSNK1G3Q9Y6M4 447 aa12.46□□□□□ -0.41
MSH5-SAPCD1-205ENST00000476085 KIF26BQ2KJY2 2108 aa12.46□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ATMQ13315 3056 aa12.46□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 HELZ2Q9BYK8 2649 aaKnown RBP12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 IGLON5A6NGN9 336 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 KDELR3O43731 214 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 POP4O95707 220 aaKnown RBP12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 MT-CO3P00414 261 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 GP1BAP07359 652 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 KRT3P12035 628 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 NME1P15531 152 aaKnown RBP12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ITPKBP27987 946 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 GKP32189 559 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PFN3P60673 137 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CDO1Q16878 200 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CLEC16AQ2KHT3 1053 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 MYLK3Q32MK0 819 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PPP1R15BQ5SWA1 713 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 MON1BQ7L1V2 547 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PHLDB2Q86SQ0 1253 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 C3orf20Q8ND61 904 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 OR2AP1Q8NGE2 309 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 BAP1Q92560 729 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 APOLD1Q96LR9 279 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 CALN1Q9BXU9 219 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 PRORYQ9H606 182 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 USP29Q9HBJ7 922 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 NLRC4Q9NPP4 1024 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 FANCLQ9NW38 375 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 LIMA1Q9UHB6 759 aaKnown RBP12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 DNAI1Q9UI46 699 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 MFHAS1Q9Y4C4 1052 aa12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 GCN1Q92616 2671 aaKnown RBP12.45□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 WASH4PA8MWX3 477 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 K7ESM1 405 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 OPA1O60313 960 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 STAT1P42224 750 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 RABIFP47224 123 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 DNA2P51530 1060 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 COPB1P53618 953 aaKnown RBP12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 GEMIN4P57678 1058 aaKnown RBP12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 HNRNPKP61978 463 aaKnown RBP eCLIP12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 EIF2B5Q13144 721 aaKnown RBP12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ACAP1Q15027 740 aa12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 INO80DQ53TQ3 878 aaPredicted RBP12.44□□□□□ -0.42
MSH5-SAPCD1-205ENST00000476085 ZNF542PQ5EBM4 170 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms