RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 PCDH8O95206 1070 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 GSRP00390 522 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 CCDC172P0C7W6 258 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 EPHB2P29323 1055 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 PRKCIP41743 596 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 ARRB1P49407 418 aaPredicted RBP18.88■□□□□ 0.61
COL7A1-209ENST00000474432 CLDN2P57739 230 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 CCDC15Q0P6D6 951 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 DNAJC3Q13217 504 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 CAMK2BQ13554 666 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 NR1I3Q14994 352 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 SMAD1Q15797 465 aaKnown RBP18.88■□□□□ 0.61
COL7A1-209ENST00000474432 EFHC2Q5JST6 749 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 ABI3BPQ7Z7G0 1075 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 OXR1Q8N573 874 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 NETO2Q8NC67 525 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 OR13H1Q8NG92 308 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 OR2AP1Q8NGE2 309 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 PPP1R16AQ96I34 528 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 BMFQ96LC9 184 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 TRIM7Q9C029 511 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 HAUS4Q9H6D7 363 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 ZDHHC6Q9H6R6 413 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 GPR27Q9NS67 375 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 ZFYVE26Q68DK2 2539 aa18.88■□□□□ 0.61
COL7A1-209ENST00000474432 TMCO5BA8MYB1 307 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 DDX3XO00571 662 aaKnown RBP eCLIP18.87■□□□□ 0.61
COL7A1-209ENST00000474432 ENC1O14682 589 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 THEGLP0DJG4 465 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 HNRNPA2B1P22626 353 aaKnown RBP18.87■□□□□ 0.61
COL7A1-209ENST00000474432 AIF1P55008 147 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 CA9Q16790 459 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 MYLK3Q32MK0 819 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 INAVAQ3KP66 663 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 ATXN7L2Q5T6C5 722 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-209ENST00000474432 DHRS13Q6UX07 377 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 CYP4V2Q6ZWL3 525 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-209ENST00000474432 TMC6Q7Z403 805 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 SLC22A18ASQ8N1D0 253 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 UMODL1-AS1Q8N2C9 162 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 SLC25A45Q8N413 288 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 HMCESQ96FZ2 354 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 CNDP2Q96KP4 475 aaKnown RBP18.87■□□□□ 0.61
COL7A1-209ENST00000474432 PEBP4Q96S96 227 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 KLF6Q99612 283 aaPredicted RBP18.87■□□□□ 0.61
COL7A1-209ENST00000474432 GPATCH2LQ9NWQ4 482 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 GGT7Q9UJ14 662 aa18.87■□□□□ 0.61
COL7A1-209ENST00000474432 TMEM191CA6NGB0 347 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 C16orf96A6NNT2 1141 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 RASA4BC9J798 803 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 RASA4O43374 803 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 CREB3O43889 395 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 MAGEC1O60732 1142 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 SDC3O75056 442 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 TMCC1O94876 653 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 LDOC1O95751 146 aaPredicted RBP18.86■□□□□ 0.61
COL7A1-209ENST00000474432 GIMD1P0DJR0 217 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 ACADVLP49748 655 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 GEMIN4P57678 1058 aaKnown RBP18.86■□□□□ 0.61
COL7A1-209ENST00000474432 YBEYP58557 167 aaPredicted RBP18.86■□□□□ 0.61
COL7A1-209ENST00000474432 SERINC3Q13530 473 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 ASIC2Q16515 512 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 ZNF805Q5CZA5 627 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 FBXL19Q6PCT2 694 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 DCUN1D2Q6PH85 259 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 PROSER1Q86XN7 944 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 LRIG1Q96JA1 1093 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 C1QTNF2Q9BXJ5 285 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 SLC17A9Q9BYT1 436 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 LRRC19Q9H756 370 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 KLHL11Q9NVR0 708 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 HPCAL4Q9UM19 191 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 ITM2BQ9Y287 266 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 PCDHGA1Q9Y5H4 931 aa18.86■□□□□ 0.61
COL7A1-209ENST00000474432 DSPP15924 2871 aaKnown RBP18.86■□□□□ 0.61
COL7A1-209ENST00000474432 ACACAQ13085 2346 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 FAM149AA5PLN7 773 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 ANKRD62A6NC57 917 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 POM121BA6NF01 834 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 KRIT1O00522 736 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 TRIM38O00635 465 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 AREL1O15033 823 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 BUB1O43683 1085 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 POP4O95707 220 aaKnown RBP18.85■□□□□ 0.61
COL7A1-209ENST00000474432 PAK4O96013 591 aaPredicted RBP18.85■□□□□ 0.61
COL7A1-209ENST00000474432 GZMAP12544 262 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 AKT2P31751 481 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 CLDN6P56747 220 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 SNRPD1P62314 119 aaKnown RBP18.85■□□□□ 0.61
COL7A1-209ENST00000474432 RPS21P63220 83 aaKnown RBP18.85■□□□□ 0.61
COL7A1-209ENST00000474432 CYTH1Q15438 398 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 INO80DQ53TQ3 878 aaPredicted RBP18.85■□□□□ 0.61
COL7A1-209ENST00000474432 CCDC157Q569K6 752 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 KIAA1161Q6NSJ0 714 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 KDM7AQ6ZMT4 941 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 EPAS1Q99814 870 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 PDFQ9HBH1 243 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 PARVAQ9NVD7 372 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 UCKL1Q9NWZ5 548 aa18.85■□□□□ 0.61
COL7A1-209ENST00000474432 LHX3Q9UBR4 397 aa18.85■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms