RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 LMAN2Q12907 356 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 NAB1Q13506 487 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 CBX2Q14781 532 aaPredicted RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 PDGFRLQ15198 375 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 PLEKHG6Q3KR16 790 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 HP1BP3Q5SSJ5 553 aaPredicted RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 SYCE2Q6PIF2 218 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 RANBP10Q6VN20 620 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 GET4Q7L5D6 327 aaPredicted RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 PRPF39Q86UA1 669 aaKnown RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 ADGRG2Q8IZP9 1017 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 UHMK1Q8TAS1 419 aaKnown RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 ARRDC2Q8TBH0 407 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 CFAP36Q96G28 342 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 FEM1CQ96JP0 617 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 MRGPRX2Q96LB1 330 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 XPO6Q96QU8 1125 aaKnown RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 NUDCD1Q96RS6 583 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 SEMA3CQ99985 751 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 WDR83Q9BRX9 315 aaKnown RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 FICDQ9BVA6 458 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 CENPHQ9H3R5 247 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 MRM3Q9HC36 420 aaKnown RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 ABCB8Q9NUT2 735 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 DUS2Q9NX74 493 aaKnown RBP13□□□□□ -0.33
VPS13D-205ENST00000473099 UBP1Q9NZI7 540 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 LGALS13Q9UHV8 139 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 VPS51Q9UID3 782 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 RABGEF1Q9UJ41 708 aa13□□□□□ -0.33
VPS13D-205ENST00000473099 TCRBV9S1A1TA0A576 114 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 TLDC2A0PJX2 215 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 NEDD8-MDP1E9PL57 170 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 INSIG1O15503 277 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 HOXC11O43248 304 aaPredicted RBP12.99□□□□□ -0.33
VPS13D-205ENST00000473099 USP1O94782 785 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 TMCC1O94876 653 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 FGF1P05230 155 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 MMP2P08253 660 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 TYRP14679 529 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 CR2P20023 1033 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 GLDCP23378 1020 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 PRKCHP24723 683 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 CSNK1DP48730 415 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 MAXP61244 160 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 SKOR1P84550 965 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 NIPAL4Q0D2K0 466 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 SPARCL1Q14515 664 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 LONRF1Q17RB8 773 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 FAM78AQ5JUQ0 283 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 PCID2Q5JVF3 399 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 LY6G5CQ5SRR4 150 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 UNC5AQ6ZN44 842 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 TAOK1Q7L7X3 1001 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 TMEM25Q86YD3 366 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 IGDCC3Q8IVU1 814 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 PGBD5Q8N414 524 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 ARFGAP2Q8N6H7 521 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 DDX51Q8N8A6 666 aaKnown RBP eCLIP12.99□□□□□ -0.33
VPS13D-205ENST00000473099 PPHLN1Q8NEY8 458 aaKnown RBP12.99□□□□□ -0.33
VPS13D-205ENST00000473099 RIN3Q8TB24 985 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 WFDC5Q8TCV5 224 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 FBF1Q8TES7 1133 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 WFIKKN2Q8TEU8 576 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 CDKL2Q92772 493 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 ATP2A3Q93084 1043 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 BHMTQ93088 406 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 TTC17Q96AE7 1141 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 ISG20Q96AZ6 181 aaKnown RBP12.99□□□□□ -0.33
VPS13D-205ENST00000473099 ARL8AQ96BM9 186 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 IFT43Q96FT9 208 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 LMLNQ96KR4 655 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 ZFP14Q9HCL3 533 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 SCUBE2Q9NQ36 999 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 SYBUQ9NX95 663 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 PLK2Q9NYY3 685 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 PSMC3IPQ9P2W1 217 aaPredicted RBP12.99□□□□□ -0.33
VPS13D-205ENST00000473099 SLC25A13Q9UJS0 675 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 SOX13Q9UN79 622 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 WNT6Q9Y6F9 365 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 IKBKGQ9Y6K9 419 aa12.99□□□□□ -0.33
VPS13D-205ENST00000473099 SCN8AQ9UQD0 1980 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 ZNF106Q9H2Y7 1883 aaKnown RBP12.98□□□□□ -0.33
VPS13D-205ENST00000473099 LOC285095A0A1B0GVY8 99 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 LINC01565O15544 149 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 SNAP91O60641 907 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 USP12O75317 370 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 ALDH1A2O94788 518 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 ADH5P11766 374 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 PABPC1P11940 636 aaKnown RBP12.98□□□□□ -0.33
VPS13D-205ENST00000473099 MSH2P43246 934 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 SERPINH1P50454 418 aaKnown RBP12.98□□□□□ -0.33
VPS13D-205ENST00000473099 RHOAP61586 193 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 AP1S1P61966 158 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 CRYMQ14894 314 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 DHCR24Q15392 516 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 CYTH1Q15438 398 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 CTC1Q2NKJ3 1217 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 EML3Q32P44 896 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 TTMPQ5BVD1 217 aa12.98□□□□□ -0.33
VPS13D-205ENST00000473099 PITRM1Q5JRX3 1037 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms