RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 NAP1L5Q96NT1 182 aaPredicted RBP16■□□□□ 0.15
CCDC88B-205ENST00000472524 CNPY3Q9BT09 278 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 SYT11Q9BT88 431 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 HDAC8Q9BY41 377 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 RETREG1Q9H6L5 497 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 HECAQ9UBI9 543 aaPredicted RBP16■□□□□ 0.15
CCDC88B-205ENST00000472524 DKK4Q9UBT3 224 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 FZD10Q9ULW2 581 aa16■□□□□ 0.15
CCDC88B-205ENST00000472524 ACACAQ13085 2346 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 MAGEC1O60732 1142 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 SERPINC1P01008 464 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 ADRB3P13945 408 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 ITGB7P26010 798 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 CLDN6P56747 220 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 GEMIN4P57678 1058 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 BNIP3Q12983 259 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 ZNF284Q2VY69 593 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 SFMBT2Q5VUG0 894 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 E4F1Q66K89 784 aaPredicted RBP15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 SEL1L3Q68CR1 1132 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 NEK5Q6P3R8 708 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 FBXL19Q6PCT2 694 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 PARS2Q7L3T8 475 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 TMC6Q7Z403 805 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 IQCHQ86VS3 1027 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 EID2Q8N6I1 236 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 RTL3Q8N8U3 475 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 SAP25Q8TEE9 199 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 ISG20Q96AZ6 181 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 KLHDC7BQ96G42 594 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 LRIG1Q96JA1 1093 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 EPAS1Q99814 870 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 HAUS4Q9H6D7 363 aa15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 ZFR2Q9UPR6 939 aaKnown RBP15.99■□□□□ 0.15
CCDC88B-205ENST00000472524 SHROOM3Q8TF72 1996 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 A0A1B0GTH6 734 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 A0A1W2PQC6 194 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 KRIT1O00522 736 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 BUB1O43683 1085 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 KDELR3O43731 214 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 THEGLP0DJG4 465 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 HNRNPA2B1P22626 353 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 PSMA2P25787 234 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 AKT2P31751 481 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 SNRPD1P62314 119 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 OVGP1Q12889 678 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 MAPK8IP2Q13387 824 aaPredicted RBP15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 IQCB1Q15051 598 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 ATXN7L2Q5T6C5 722 aaPredicted RBP15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 PPP1R2P3Q6NXS1 205 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 ZNF571Q7Z3V5 609 aaPredicted RBP15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 TMEM145Q8NBT3 493 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 NETO2Q8NC67 525 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 VCPIP1Q96JH7 1222 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 CNDP2Q96KP4 475 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 FUCA2Q9BTY2 467 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 KLC2Q9H0B6 622 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 NOL6Q9H6R4 1146 aaKnown RBP15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 CATSPERBQ9H7T0 1116 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 ERVMER34-1Q9H9K5 563 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 PARVAQ9NVD7 372 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 GPATCH2LQ9NWQ4 482 aa15.98■□□□□ 0.15
CCDC88B-205ENST00000472524 APC2O95996 2303 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 CXorf51AA0A1B0GTR3 108 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 SYCE3A1L190 88 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 ENC1O14682 589 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 SDC3O75056 442 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 TMCC1O94876 653 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 LDOC1O95751 146 aaPredicted RBP15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 GSRP00390 522 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 RXRGP48443 463 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 AIF1P55008 147 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 CLDN2P57739 230 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 TPI1P60174 286 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 KLHL30Q0D2K2 578 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 DNAJC3Q13217 504 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 MAMLD1Q13495 774 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 PDCD7Q8N8D1 485 aaKnown RBP15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 OR2AP1Q8NGE2 309 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 HMCESQ96FZ2 354 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 CRELD1Q96HD1 420 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 CALN1Q9BXU9 219 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 SCUBE2Q9NQ36 999 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 AP4E1Q9UPM8 1137 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 FADS3Q9Y5Q0 445 aa15.97■□□□□ 0.15
CCDC88B-205ENST00000472524 IGSF10Q6WRI0 2623 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 ZSCAN5CA6NGD5 496 aaPredicted RBP15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 C16orf96A6NNT2 1141 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 RASA4BC9J798 803 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 RASA4O43374 803 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 UGT2B4P06133 528 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 SKILP12757 684 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 ABL2P42684 1182 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 RPS21P63220 83 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 TMEM259Q4ZIN3 620 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 ZNF805Q5CZA5 627 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 PLEKHA7Q6IQ23 1121 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 KIAA1161Q6NSJ0 714 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 GCNT7Q6ZNI0 430 aa15.96■□□□□ 0.15
CCDC88B-205ENST00000472524 PTAR1Q7Z6K3 402 aaPredicted RBP15.96■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms